PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Do015302.1

Organism

Dichanthelium oligosanthes

Taxonomic ID

888268

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium

Family

FAR1

Protein Properties

Length: 311aa MW: 35331.3 Da PI: 8.3094

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Do015302.1	genome	Dichan	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	47.9	4.3e-15	33	115	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrt..fvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 ++Yn Y+ e+GF +r s+s++ k++ge++++ +vC + g+++ +k+ + + gC a +++ +++d+ w++++++ +HnH+++ Do015302.1 33 DYYNLYSWEMGFGIRYSSSQSYKKHGETYRNMvlLVCVCAGTPDAASKN---------SIKQGCPAFMRLLRTDDDGWYIKEFVADHNHKMS 115 69*************999999999998764338****998888.........999**************************996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	4.9E-12	33	115	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	8.9E-16	238	302	IPR018289	MULE transposase domain

Sequence ? help Back to Top
Protein Sequence Length: 311 aa Download sequence Send to blast
LEEALRHYGD RGAGPVVVPR AGLEFDSCEE AFDYYNLYSW EMGFGIRYSS SQSYKKHGET 60 YRNMVLLVCV CAGTPDAASK NSIKQGCPAF MRLLRTDDDG WYIKEFVADH NHKMSEACGE 120 KKCWKSHRQI DPHTKELIKN LRANNVSLTK VQCILSSFFG NNNVSAVTKR ALRSLTVQIN 180 REKAEDDVQK TIENDVRINR EEAGFANVVD LDDDGKIKTM MWTNGKSRHD YLCFGDAITF 240 DTTYKTNKYN TPFGLFVGVN KHFQSVIVAG VVMLDESIKS FEWVFTQFVA LMGGKVPKMI 300 LTGMRACFQR K

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Do015302.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004968375.1	1e-179	uncharacterized protein LOC101776624 isoform X2
TrEMBL	A0A1E5VJD0	0.0	A0A1E5VJD0_9POAL; Protein FAR-RED IMPAIRED RESPONSE 1 (Fragment)
STRING	Si005043m	1e-174	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP619	19	91

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G15090.1	3e-38	FAR1 family protein