PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do015171.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family MYB_related
Protein Properties Length: 287aa    MW: 31669.2 Da    PI: 4.8424
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do015171.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding39.61.2e-12154198348
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +WT+ E+++++ + k + g+ W++ +r+    Rt+ q+ s++qky+
       Do015171.1 154 KWTAKEHKRFLAGLKDYEGR-WNAMSREYLPSRTASQIASHYQKYR 198
                      8*******************.******9888**************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500904.4142975IPR017877Myb-like domain
PROSITE profilePS5129411.067145202IPR017930Myb domain
SuperFamilySSF466891.79E-11148202IPR009057Homeodomain-like
TIGRFAMsTIGR015574.5E-10150201IPR006447Myb domain, plants
SMARTSM007171.9E-8151200IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.5E-9154199IPR009057Homeodomain-like
CDDcd001671.81E-6154197No hitNo description
PfamPF002492.7E-9154198IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 287 aa     Download sequence    Send to blast
MPPQDESAAA AAPPPALAAL PAPEQEPTWT RREDKFLQLL YFTRNAVSFH DAWKVIGKTE  60
RQMEERCSFM FDELRHVLEG LDEVETPPEW DMEIAATTIA APAAVEQGPE AVAPAGPPVA  120
AEEDSAAPTV VGGGDRSEGQ AREKKKRKKK EAVKWTAKEH KRFLAGLKDY EGRWNAMSRE  180
YLPSRTASQI ASHYQKYRKR QKQRERKECR RASIHDITDP GSAAAPAVAG GEAAAWKDDD  240
LPRAEASARG QEDEPWEPVQ STEPTREDGL GPVEEFPGAD DSGTLLT
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1143149KKKRKKK
2144148KKRKK
3197203RKRQKQR
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo015171.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004986850.15e-99transcription factor SRM1
TrEMBLA0A1E5VFE60.0A0A1E5VFE6_9POAL; Uncharacterized protein
STRINGSi039462m2e-98(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP144181825