 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
Do015167.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
|
| Family |
GRAS |
| Protein Properties |
Length: 418aa MW: 44703.6 Da PI: 6.2494 |
| Description |
GRAS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Do015167.1 | genome | Dichan | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GRAS | 264.5 | 3.7e-81 | 34 | 409 | 2 | 365 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalkl..fsevsPilkfshlta 98
++lLl+cA a++s+d +laq++++ l+++as++gdp+qRl++ +++AL ar r l+ ++++++ ++++++++l +++++P+++f++ +
Do015167.1 34 QQLLLHCAAALESNDVTLAQQAMWVLNNIASSQGDPNQRLTSWLLRALVARACR----LCGPAGTTQAAPAARERAVSVTELaeYVDLTPWHRFGFTAS 128
699***************************************************....44444444444444455555555555*************** PP
GRAS 99 NqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg...skeeleetgerLakfAeelgvpfefnvl............. 181
N aIl+av+g+ +vH++D++++ ++QWp+L++ L++Rp+gpp lRiT+ ++ ++ + ee+g rLa+fA++ gv++efnv+
Do015167.1 129 NGAILRAVAGNAAVHVLDLSVTRCMQWPTLIDMLSKRPGGPPALRITVPSARPAVpplLGVSDEELGVRLANFAKSKGVQLEFNVVgkvnstsptsspk 227
***********************************************99996666888778889***********************999999998887 PP
GRAS 182 ....vakrledl..eleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleak 274
++++l+++ ++ +L+++ gEal+Vn++ + ++ + rd++L++v+ l+P +v+v++++ad++s+s+ r+ ++++++ lfd+l+++
Do015167.1 228 kqaaLCQDLASVlsDPPSLSLRDGEALVVNCQSWIRHVA------PGSRDAFLDAVRALNPCLVTVTDEDADLDSPSLSSRIEGCFNFHWILFDALDTS 320
7666555555547789999**************999997......555788************************************************ PP
GRAS 275 lpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdr 365
+pr+s r+ E++ +gr+i++vv + a+ er e+ ++ er+++ GF v+++e+aa ++++ll++++ g+ v+ e++ lvl+Wk++
Do015167.1 321 APRDSPRRVEHEAA-VGRKIESVVGADDADGAERSESGARLAERMRRNGFAGVAFDEEAAGEVRRLLSEHA-TGWGVKREEDMLVLTWKGH 409
***********999.********************************************************.99**************985 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 418 aa
Download sequence Send
to blast |
MEQELRTAGG GGGGLKAHSS VCFSGALIDG PRIQQLLLHC AAALESNDVT LAQQAMWVLN 60
NIASSQGDPN QRLTSWLLRA LVARACRLCG PAGTTQAAPA ARERAVSVTE LAEYVDLTPW 120
HRFGFTASNG AILRAVAGNA AVHVLDLSVT RCMQWPTLID MLSKRPGGPP ALRITVPSAR 180
PAVPPLLGVS DEELGVRLAN FAKSKGVQLE FNVVGKVNST SPTSSPKKQA ALCQDLASVL 240
SDPPSLSLRD GEALVVNCQS WIRHVAPGSR DAFLDAVRAL NPCLVTVTDE DADLDSPSLS 300
SRIEGCFNFH WILFDALDTS APRDSPRRVE HEAAVGRKIE SVVGADDADG AERSESGARL 360
AERMRRNGFA GVAFDEEAAG EVRRLLSEHA TGWGVKREED MLVLTWKGHG SVRNEELK
|
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | KJ727002 | 0.0 | KJ727002.1 Zea mays clone pUT3978 GRAS transcription factor (GRAS62) gene, partial cds. |
