 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
Do015133.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
|
| Family |
bHLH |
| Protein Properties |
Length: 472aa MW: 52691.9 Da PI: 5.6082 |
| Description |
bHLH family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Do015133.1 | genome | Dichan | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | HLH | 35.5 | 1.8e-11 | 272 | 318 | 3 | 54 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
+a+ + Er RR+++N ++ Lr+l P++ +K++ a+i+ A+eYI++L
Do015133.1 272 KANFATERERREQLNVKYGALRSLFPNP-----TKNDRASIVGDAIEYINEL 318
68899***********************.....9***************998 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 472 aa
Download sequence Send
to blast |
MIAGGGYFDG SHDHILMEGS MIHDSSQSSI YDNTNAEQQN FISLAPFSIE DHSNPDNLTS 60
EPARVIDHIQ HQLWIDMDQD HSGHMIQEVP PVETTNLVPA MYSVQDHILS HQIGEGAHSI 120
TVEQQILDYE AALYRNGAYA AGHDLLNSLR IQRCGLTTEF PSTEHIFGDP AQNTVNHLDM 180
NNDLPGAAIH ESGIMFSDST LPLSYHATQS HMLKDLYHSR PQNYGLFTSD DGMIGVPGVS 240
GNIFQEIDGR QFDSSILGGR RQKGGFGKGK GKANFATERE RREQLNVKYG ALRSLFPNPT 300
KNDRASIVGD AIEYINELNR TVKELKIIVE KRRNSHDRRK MLKLDDEAAD DGESSSMQPG 360
NDDQNNQING AIRSSWVQRR SKECDVDVRI VDDEINIKFT EKKRANSLLC AAKVLEEFHL 420
ELIHVVGGII GDHHIFMFNA KIPKCSSVYA CAVAKKLLEA VEMKNQALNI FD
|
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription factor involved in the regulation of tapetum programmed cell death (PCD) and degradation during male reproductive development (PubMed:23519457, PubMed:23385589). Interacts with TDR and promote tapetal PCD by regulating the expression of RTS, and the two lipid-transfer proteins C4 and C6, which function in microspore development (PubMed:23519457). Acts downstream from and interacts with TDR in the regulation of tapetal PCD. Regulates directly the aspartic protease AP25 and AP37 during tapetal PCD (PubMed:23385589). May not target the cysteine protease CP1 (PubMed:23519457, PubMed:23385589). {ECO:0000269|PubMed:23385589, ECO:0000269|PubMed:23519457}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | EU962797 | 0.0 | EU962797.1 Zea mays clone 245608 helix-loop-helix DNA-binding domain containing protein mRNA, complete cds. |
