PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Do015101.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
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Family | MYB | ||||||||
Protein Properties | Length: 246aa MW: 27013 Da PI: 6.8751 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 51 | 3.3e-16 | 24 | 71 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT eEd+ lv++v +G g W+ ar g+ Rt+k+c++rw++yl Do015101.1 24 KGPWTMEEDQVLVNYVGAHGEGAWNNLARAAGLSRTGKSCRLRWLNYL 71 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 56.8 | 5e-18 | 77 | 120 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg++T+eE+el+v++ +++G++ W++Ia++++ gRt++++k++w++ Do015101.1 77 RGNFTAEEEELIVRLQARWGNR-WSRIAKHLP-GRTDNEVKNFWRT 120 89********************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 14.937 | 19 | 71 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.46E-30 | 22 | 118 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.9E-12 | 23 | 73 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.9E-14 | 24 | 71 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.8E-23 | 25 | 78 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 8.68E-10 | 26 | 71 | No hit | No description |
PROSITE profile | PS51294 | 25.373 | 72 | 126 | IPR017930 | Myb domain |
SMART | SM00717 | 3.8E-16 | 76 | 124 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.2E-16 | 77 | 120 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.95E-14 | 79 | 120 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.1E-23 | 79 | 125 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009740 | Biological Process | gibberellic acid mediated signaling pathway | ||||
GO:0009867 | Biological Process | jasmonic acid mediated signaling pathway | ||||
GO:0080086 | Biological Process | stamen filament development | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 246 aa Download sequence Send to blast |
MQSSMDAGAS VQQVLPPEPA AVRKGPWTME EDQVLVNYVG AHGEGAWNNL ARAAGLSRTG 60 KSCRLRWLNY LRPDLRRGNF TAEEEELIVR LQARWGNRWS RIAKHLPGRT DNEVKNFWRT 120 KIEKKHRSKA ASYCSGAVVG GVITDGTCSV DDKSMSTPAS IEDQGSSNSG RTGVTHHYGI 180 VEQKPAISSM DYHQGCYDDD VRGGGGTSAA AVMADFFPPE FLAASGDNFW AIEDFWSTMQ 240 PFHGNS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 1e-27 | 12 | 125 | 18 | 127 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Do015101.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC120986 | 2e-31 | AC120986.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OJ1781_H11, complete sequence. | |||
GenBank | AC120990 | 2e-31 | AC120990.3 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OSJNBa0040E06, complete sequence. | |||
GenBank | AP014961 | 2e-31 | AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012613 | 2e-31 | CP012613.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 5 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025808591.1 | 7e-99 | transcription factor MYB24-like | ||||
TrEMBL | A0A1E5WMC7 | 0.0 | A0A1E5WMC7_9POAL; Transcription factor MYB21 | ||||
STRING | Si024431m | 5e-84 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP198 | 38 | 330 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G27810.1 | 3e-68 | myb domain protein 21 |