PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do015006.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family GRAS
Protein Properties Length: 413aa    MW: 43613.8 Da    PI: 5.9854
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do015006.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS306.37e-94344132374
        GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvsely....kalppsetsekn..sseelaalklfsevsPilkfs 94 
                 +el+l+cA  ++ gd   a+++ a++  +a p+gd+  Rla++f++ALa+rl +  ++      +  +p+ +++++  ++ +++a+ +++++ P l+f+
  Do015006.1  34 RELVLACAGLLHRGDVDGARRAAAEVLSTADPRGDAADRLAHHFARALARRLDDDDDRARagedDVAAPKGAASSSvpEAPSATAYLAYNQIAPXLRFA 132
                 5789************************************************995554431111223444444444445566667777*********** PP

        GRAS  95 hltaNqaIleavege..ervHiiDfdisqGlQWpaLlqaLasRp...egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvl...vakr 185
                 hltaNqaIl+a++    +r+Hi+D+d+ +G+Q p+LlqaLa+R+    gp ++RiTg g+    +++ l +tg+rL+ fA++l++pf+f++l    +++
  Do015006.1 133 HLTANQAILDAAAAGgaRRLHIVDLDAAHGVQRPPLLQALADRAdpaLGPIEVRITGAGP----DRDVLLRTGDRLRAFASSLNLPFRFHPLllpCTTQ 227
                 **********9765444***************************5544578*********....9***************************6655556 PP

        GRAS 186 ledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnse...sFlerflealeyysalfdsleaklpresee 281
                 l++     L+++p+E+laVn+vl lh+l  +++++++    +L+ vks++P+vv+++e+ea  +s    ++ +r++ a++yysa+fd+lea++p+ s +
  Do015006.1 228 LAADPATVLELHPDETLAVNCVLFLHKLG-SEGEIAE----FLSWVKSMNPTVVTLAEREATIGSDcpgDLHRRVAAAMDYYSAVFDALEATVPPGSAD 321
                 677778899*******************8.5555555....**********************8876779***************************** PP

        GRAS 282 rikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                 r +vE+e+lg+ei  vva  +a    r + +e+W  + ++aG++p pls +a++qa+lllr ++ s+gy  ee +g+ +l W++rpL+svS+W+
  Do015006.1 322 RLSVEHEVLGQEIDAVVAPGHAG--GRARGFESWATAARAAGLSPRPLSAFAVSQARLLLRLHYpSEGYVAEEGRGACFLAWQTRPLMSVSSWQ 413
                 ********************999..99******************************************************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098549.8867392IPR005202Transcription factor GRAS
PfamPF035142.4E-9134413IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010223Biological Processsecondary shoot formation
Sequence ? help Back to Top
Protein Sequence    Length: 413 aa     Download sequence    Send to blast
MLGAPRHDGD AAAARAHREQ EQGAAAAAPS SSPRELVLAC AGLLHRGDVD GARRAAAEVL  60
STADPRGDAA DRLAHHFARA LARRLDDDDD RARAGEDDVA APKGAASSSV PEAPSATAYL  120
AYNQIAPXLR FAHLTANQAI LDAAAAGGAR RLHIVDLDAA HGVQRPPLLQ ALADRADPAL  180
GPIEVRITGA GPDRDVLLRT GDRLRAFASS LNLPFRFHPL LLPCTTQLAA DPATVLELHP  240
DETLAVNCVL FLHKLGSEGE IAEFLSWVKS MNPTVVTLAE REATIGSDCP GDLHRRVAAA  300
MDYYSAVFDA LEATVPPGSA DRLSVEHEVL GQEIDAVVAP GHAGGRARGF ESWATAARAA  360
GLSPRPLSAF AVSQARLLLR LHYPSEGYVA EEGRGACFLA WQTRPLMSVS SWQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A6e-505741327375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription regulator that controls rice tillering by initiating axillary buds and promoting their outgrowth. Rice tiller is a specialized grain-bearing branch that is formed on the unelongated basal internode and grows independently of the mother stem (culm) by means of its own adventitious roots. {ECO:0000269|PubMed:12687001}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo015006.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJQ9516670.0JQ951667.1 Chrysopogon gryllus Monoculm1B (moc1) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025806722.10.0protein MONOCULM 1
SwissprotQ84MM91e-139MOC_ORYSJ; Protein MONOCULM 1
TrEMBLA0A1E5VG670.0A0A1E5VG67_9POAL; Protein MONOCULM 1
STRINGPavir.J22770.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP36533479
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G55580.13e-79GRAS family protein
Publications ? help Back to Top
  1. Li X, et al.
    Control of tillering in rice.
    Nature, 2003. 422(6932): p. 618-21
    [PMID:12687001]
  2. Sun F, et al.
    Identification and functional analysis of the MOC1 interacting protein 1.
    J Genet Genomics, 2010. 37(1): p. 69-77
    [PMID:20171579]
  3. Sanyal A, et al.
    Orthologous comparisons of the Hd1 region across genera reveal Hd1 gene lability within diploid Oryza species and disruptions to microsynteny in Sorghum.
    Mol. Biol. Evol., 2010. 27(11): p. 2487-506
    [PMID:20522726]
  4. Yan WH, et al.
    A major QTL, Ghd8, plays pleiotropic roles in regulating grain productivity, plant height, and heading date in rice.
    Mol Plant, 2011. 4(2): p. 319-30
    [PMID:21148627]
  5. Xu C, et al.
    Degradation of MONOCULM 1 by APC/C(TAD1) regulates rice tillering.
    Nat Commun, 2012. 3: p. 750
    [PMID:22434193]
  6. Lin Q, et al.
    Rice APC/C(TE) controls tillering by mediating the degradation of MONOCULM 1.
    Nat Commun, 2012. 3: p. 752
    [PMID:22434195]
  7. Liang WH,Shang F,Lin QT,Lou C,Zhang J
    Tillering and panicle branching genes in rice.
    Gene, 2014. 537(1): p. 1-5
    [PMID:24345551]
  8. Zhang B, et al.
    Novel function of a putative MOC1 ortholog associated with spikelet number per spike in common wheat.
    Sci Rep, 2015. 5: p. 12211
    [PMID:26197925]