PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do014909.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family MYB
Protein Properties Length: 343aa    MW: 36962.2 Da    PI: 5.7718
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do014909.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding57.92.3e-1896141147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +g+W++eEd  l d+v++lG ++W++Iar ++ gR++k+c++rw + 
       Do014909.1  96 KGPWSPEEDAALSDLVERLGARNWTLIARGIP-GRSGKSCRLRWCNQ 141
                      79******************************.***********985 PP
2Myb_DNA-binding409.3e-13162201647
                      HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   6 teEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +eEd ++  a++ +G++ W+ Ia+ +  gRt++ +k++w++ 
       Do014909.1 162 EEEDRIIMAAHAVHGNK-WACIAKLLD-GRTDNAIKNHWNST 201
                      79***************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129426.99191146IPR017930Myb domain
SuperFamilySSF466891.12E-2794198IPR009057Homeodomain-like
SMARTSM007173.8E-1595144IPR001005SANT/Myb domain
PfamPF002492.6E-1796141IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.0E-2297145IPR009057Homeodomain-like
CDDcd001671.23E-1498140No hitNo description
Gene3DG3DSA:1.10.10.607.3E-19146205IPR009057Homeodomain-like
PROSITE profilePS5129417.486149206IPR017930Myb domain
SMARTSM007174.0E-7156204IPR001005SANT/Myb domain
PfamPF002491.6E-10162201IPR001005SANT/Myb domain
CDDcd001671.00E-8162202No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009737Biological Processresponse to abscisic acid
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 343 aa     Download sequence    Send to blast
MSAPETAVSP APSPQPPSDP PAVADAAHSN SPPMAVETQT LTEPEPQPQP QPHHSSPPPS  60
VEDDDVVIVS GASVGGDAAD SSAAAAASAA MEERVKGPWS PEEDAALSDL VERLGARNWT  120
LIARGIPGRS GKSCRLRWCN QLDPQVKRKP FTGTASFHLC IEEEDRIIMA AHAVHGNKWA  180
CIAKLLDGRT DNAIKNHWNS TLRRRYCNNG RCKHGGSVER SIPEVSRAVS EESWPSFTAM  240
DVRDAPLQAV PETSAGAWHI ADPYYSTQAV DPPYLSRPAA KIGAFRPYKL GQMEPTKQET  300
PNSVFNAHER PLKNSLLGPE FNEFEDHPPI LNSSFASLSA PPA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A6e-38952056107B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo014909.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002458769.11e-167transcription factor MYB1
TrEMBLA0A1E5VS770.0A0A1E5VS77_9POAL; Transcription factor MYB44
STRINGSb03g039950.11e-167(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP89903647
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G55730.19e-58myb domain protein 109