PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do014846.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family E2F/DP
Protein Properties Length: 454aa    MW: 48733.6 Da    PI: 5.6488
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do014846.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP57.81.8e-18196245155
     E2F_TDP   1 rkeksLrlltqkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLea 55 
                 r+++sL llt+kf++ll+ +e+g+++ln++a++L   +v  ++RRiYDi+NVLea
  Do014846.1 196 RYDSSLSLLTKKFINLLQGAEDGTLDLNKAAETL---EV--QKRRIYDITNVLEA 245
                 6899******************************...99..*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PRINTSPR012175.5E-10425No hitNo description
PRINTSPR012175.5E-102642No hitNo description
PRINTSPR012175.5E-105168No hitNo description
PRINTSPR012175.5E-1080105No hitNo description
Gene3DG3DSA:1.10.10.101.4E-18193245IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467851.07E-10196246IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013729.2E-16196264IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023194.5E-16198245IPR003316E2F/DP family, winged-helix DNA-binding domain
CDDcd146601.21E-25265361No hitNo description
SuperFamilySSF1440743.92E-18267360No hitNo description
PfamPF164213.8E-17269358IPR032198E2F transcription factor, CC-MB domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005667Cellular Componenttranscription factor complex
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 454 aa     Download sequence    Send to blast
MDGGSSSLPL PHPPPQVYLC RPLPPPGPPV TAPPRVHLFR PPSPIPIFSS RPRAAASPPI  60
PPPPAAAPAP APAPAPPPQA AAAPAPPRPP PAAPGSIDKP PPRPPQPQAG SMLPPPAPKA  120
AGKGRPTPKA QPNEQNNGRE NSQAEINMGV TTFEPVKVIK RVKKIKVPKQ TVGTADGFGA  180
IEGVAGPSLS SLNHCRYDSS LSLLTKKFIN LLQGAEDGTL DLNKAAETLE VQKRRIYDIT  240
NVLEAAFLPI VFCKLPSNCM FVTTDGFDNL QEELEALYDE EFRLDDEIRL LYLLKEEINK  300
IPHFQGSTLI AINAPHGTCI EVPDPNADLY LYGHLGLQEK HYKIVLRSSM GPIDCYLISD  360
HQEILNPDQQ EAVDKLEPVV ATGSSQAVQQ MDCEPNQTPG KGQSNAVCTH TTKPSKKQEI  420
MSGILRIVPS DADADADYWL ASDVDVSMTD AWGT
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo014846.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0647371e-80BT064737.1 Zea mays full-length cDNA clone ZM_BFb0090H09 mRNA, complete cds.
GenBankEU9714991e-80EU971499.1 Zea mays clone 366261 E2F-related protein mRNA, complete cds.
GenBankKJ7268781e-80KJ726878.1 Zea mays clone pUT3419 E2F-DP transcription factor (E2F5) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004975004.10.0transcription factor E2FC
TrEMBLA0A1E5VGL90.0A0A1E5VGL9_9POAL; Transcription factor E2FB
STRINGGRMZM2G050590_P011e-168(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62537148
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22220.32e-58E2F transcription factor 1