PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Do014779.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
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Family | NF-YC | ||||||||
Protein Properties | Length: 319aa MW: 35807 Da PI: 4.3244 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 54.3 | 2.9e-17 | 44 | 141 | 3 | 98 |
NF-YC 3 ksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrr.tlkksdiaaavtrtdifdflvdivp 97 fw + e+ df+nh lP+ i i+ka++ +++s ++P +++k celfi elt+ +w+ a + rr + sdi +a++ ++ fl d+ Do014779.1 44 DEFWRRSqedTENIVDFNNHILPMDHITEIIKANQG-SIMSYDTPPFVTKLCELFIQELTICAWMCASSHGRRfIILESDIIEAIN-SKPCVFLNDVLQ 140 5799866455888999*****************986.6779*************************998877626789******96.556678998877 PP NF-YC 98 r 98 r Do014779.1 141 R 141 6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47113 | 7.38E-12 | 42 | 128 | IPR009072 | Histone-fold |
Gene3D | G3DSA:1.10.20.10 | 4.8E-11 | 59 | 127 | IPR009072 | Histone-fold |
Pfam | PF00808 | 2.1E-5 | 65 | 124 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 319 aa Download sequence Send to blast |
MELKMARYRC STMSNGSNER SEDPQEFHVL PSTPLTISQE QEIDEFWRRS QEDTENIVDF 60 NNHILPMDHI TEIIKANQGS IMSYDTPPFV TKLCELFIQE LTICAWMCAS SHGRRFIILE 120 SDIIEAINSK PCVFLNDVLQ RHGINLDQAS TFNSASKVQQ ETNFLVATTT LLGDDSMLDV 180 KYKDGYSDLF MNDNNHHSCE SSNLAAPDIV TPPMSLEEVV NGGYQNIVVQ KCSETYDFAG 240 GNKCNTVPTE DIVTSKSTLH KDIMASESTL HKLVNEDLQF SEDNVVPIIN TQPDPLKLKN 300 DEDLNNISAN PSGSTKETK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Do014779.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002450581.1 | 9e-93 | uncharacterized protein LOC8071541 | ||||
TrEMBL | A0A1E5VJD6 | 0.0 | A0A1E5VJD6_9POAL; Uncharacterized protein | ||||
STRING | Sb05g007280.1 | 3e-92 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP17894 | 5 | 10 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G48590.1 | 2e-14 | nuclear factor Y, subunit C1 |