PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Do014551.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
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Family | Nin-like | ||||||||
Protein Properties | Length: 894aa MW: 97845.8 Da PI: 5.9191 | ||||||||
Description | Nin-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | RWP-RK | 49.1 | 1.1e-15 | 546 | 570 | 28 | 52 |
RWP-RK 28 clTvLKriCRqyGIkRWPhRkiksl 52 c+T+LKriCRq+GI RWP+Rki+++ Do014551.1 546 CPTTLKRICRQHGILRWPSRKINKV 570 ***********************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51519 | 11.649 | 502 | 590 | IPR003035 | RWP-RK domain |
Pfam | PF02042 | 1.5E-13 | 545 | 570 | IPR003035 | RWP-RK domain |
SuperFamily | SSF54277 | 9.81E-24 | 786 | 875 | No hit | No description |
Gene3D | G3DSA:3.10.20.240 | 1.3E-22 | 789 | 871 | No hit | No description |
SMART | SM00666 | 2.5E-20 | 792 | 874 | IPR000270 | PB1 domain |
PROSITE profile | PS51745 | 25.419 | 792 | 874 | IPR000270 | PB1 domain |
Pfam | PF00564 | 5.5E-17 | 793 | 873 | IPR000270 | PB1 domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 894 aa Download sequence Send to blast |
MDMPTPSNRA SYIGSPMGSS DDPFGVAAMM NFDGYSELCS PSVADQIFSM LNDPSAAQQM 60 FAMWSSLGSS PRAAAMREDM PFDTYSGPVD ATAAPTQRNT SSSALSPIGV NRELKDSDEL 120 VPNNGSQQGS NIIPRSMGNI FADKMLMALS LFRKSLSDGV LAQVWMPVEH NGRVVLSTCE 180 QPFLLDQDLA GYREVSRNFL FSVKEEPGLH LGLPGRVFIS GVPEWTSSVL YYSKPEYLRM 240 EHALRHEIRG SLAMPIYDPS KGSCCAVLEL VTNKEKPDFD AEMDSAVNLQ TTTDRSNPKV 300 YSENQKSAFT EILDVLRAIC HAHMLPLALT WVPISNSIDN GYCVGKNIGV DSQSGKAVLR 360 VHESACYIND TNMRGFLHAC AERHLEKGQG IAGRALKSNL PFFSPDIREY SIEDYPLAHH 420 ARKFGLHAAV AIRLRSTYTG NDDYILELFL PVNCKGCGEQ QMLLNNLSST MQRICKSLQT 480 VSEVEADDVS ASAAAMYKKT NESLPTGNSE NSSHEDQPIT EPAFQDLSLG DKQGDIEPDQ 540 VLHYFCPTTL KRICRQHGIL RWPSRKINKV NRSLKKIQTV INSVHGVDRS LQYDPATGSL 600 VPAASRPDKM PFSACDTLPT SSVGKTMEEK SSPKSGQGLS SPDGWQRETS LFHVSSISKR 660 EGDEVQMLAN NNNSNRNYAS DFAKVTPHSN SEDAQGPLYP IGAVNSLRAG ETGYINSPTS 720 LHPSINSVED HTMGRNSSFV QAGVTMVDGQ DTKEHTHPST SGMSDSSSGS ASSQPTFKGN 780 PGHVVKDRSS PALTVKATYN GDTVRFKFLP AMGWYHLLEE IAKRFKLTTG AFQLKYKDDE 840 DEWVILANDS DLQECVDVLD SIGSRNVKLQ VRDLPCLISS SGSSSCLQVE THSS |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Do014551.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KJ727756 | 0.0 | KJ727756.1 Zea mays clone pUT5699 NLP transcription factor (NLP3) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025823107.1 | 0.0 | protein NLP2-like | ||||
Swissprot | Q0JC27 | 0.0 | NLP2_ORYSJ; Protein NLP2 | ||||
TrEMBL | A0A1E5VHA5 | 0.0 | A0A1E5VHA5_9POAL; Protein NLP2 | ||||
STRING | Pavir.Ga01502.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3670 | 35 | 73 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G59580.2 | 1e-153 | Nin-like family protein |
Publications ? help Back to Top | |||
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