PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do014551.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family Nin-like
Protein Properties Length: 894aa    MW: 97845.8 Da    PI: 5.9191
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do014551.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK49.11.1e-155465702852
      RWP-RK  28 clTvLKriCRqyGIkRWPhRkiksl 52 
                 c+T+LKriCRq+GI RWP+Rki+++
  Do014551.1 546 CPTTLKRICRQHGILRWPSRKINKV 570
                 ***********************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5151911.649502590IPR003035RWP-RK domain
PfamPF020421.5E-13545570IPR003035RWP-RK domain
SuperFamilySSF542779.81E-24786875No hitNo description
Gene3DG3DSA:3.10.20.2401.3E-22789871No hitNo description
SMARTSM006662.5E-20792874IPR000270PB1 domain
PROSITE profilePS5174525.419792874IPR000270PB1 domain
PfamPF005645.5E-17793873IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 894 aa     Download sequence    Send to blast
MDMPTPSNRA SYIGSPMGSS DDPFGVAAMM NFDGYSELCS PSVADQIFSM LNDPSAAQQM  60
FAMWSSLGSS PRAAAMREDM PFDTYSGPVD ATAAPTQRNT SSSALSPIGV NRELKDSDEL  120
VPNNGSQQGS NIIPRSMGNI FADKMLMALS LFRKSLSDGV LAQVWMPVEH NGRVVLSTCE  180
QPFLLDQDLA GYREVSRNFL FSVKEEPGLH LGLPGRVFIS GVPEWTSSVL YYSKPEYLRM  240
EHALRHEIRG SLAMPIYDPS KGSCCAVLEL VTNKEKPDFD AEMDSAVNLQ TTTDRSNPKV  300
YSENQKSAFT EILDVLRAIC HAHMLPLALT WVPISNSIDN GYCVGKNIGV DSQSGKAVLR  360
VHESACYIND TNMRGFLHAC AERHLEKGQG IAGRALKSNL PFFSPDIREY SIEDYPLAHH  420
ARKFGLHAAV AIRLRSTYTG NDDYILELFL PVNCKGCGEQ QMLLNNLSST MQRICKSLQT  480
VSEVEADDVS ASAAAMYKKT NESLPTGNSE NSSHEDQPIT EPAFQDLSLG DKQGDIEPDQ  540
VLHYFCPTTL KRICRQHGIL RWPSRKINKV NRSLKKIQTV INSVHGVDRS LQYDPATGSL  600
VPAASRPDKM PFSACDTLPT SSVGKTMEEK SSPKSGQGLS SPDGWQRETS LFHVSSISKR  660
EGDEVQMLAN NNNSNRNYAS DFAKVTPHSN SEDAQGPLYP IGAVNSLRAG ETGYINSPTS  720
LHPSINSVED HTMGRNSSFV QAGVTMVDGQ DTKEHTHPST SGMSDSSSGS ASSQPTFKGN  780
PGHVVKDRSS PALTVKATYN GDTVRFKFLP AMGWYHLLEE IAKRFKLTTG AFQLKYKDDE  840
DEWVILANDS DLQECVDVLD SIGSRNVKLQ VRDLPCLISS SGSSSCLQVE THSS
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo014551.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7277560.0KJ727756.1 Zea mays clone pUT5699 NLP transcription factor (NLP3) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025823107.10.0protein NLP2-like
SwissprotQ0JC270.0NLP2_ORYSJ; Protein NLP2
TrEMBLA0A1E5VHA50.0A0A1E5VHA5_9POAL; Protein NLP2
STRINGPavir.Ga01502.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP36703573
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G59580.21e-153Nin-like family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]