PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Do014512.1

Organism

Dichanthelium oligosanthes

Taxonomic ID

888268

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium

Family

HB-other

Protein Properties

Length: 1438aa MW: 157520 Da PI: 6.8086

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Do014512.1	genome	Dichan	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	31	4.4e-10	719	764	7	52
--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHH CS Homeobox 7 ftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrR 52 f + ++ L+ +Fek++yps++++e LA++lgLt +qV WF R Do014512.1 719 FGPIVTQKLKVHFEKDPYPSRATKENLAQELGLTFNQVCRWFSSTR 764 66677899**********************************8776 PP
2	Homeobox	32	2.1e-10	938	977	13	52
HHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHH CS Homeobox 13 eeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrR 52 + L+ +Fek++yps++++e LA++lgLt +qV+ WF R Do014512.1 938 QKLKVHFEKDPYPSRATKESLAQELGLTFNQVSKWFSATR 977 78999*******************************8776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	12.876	710	770	IPR001356	Homeobox domain
SMART	SM00389	7.7E-12	712	774	IPR001356	Homeobox domain
SuperFamily	SSF46689	4.06E-11	712	771	IPR009057	Homeodomain-like
CDD	cd00086	2.26E-11	713	768	No hit	No description
Pfam	PF00046	1.7E-7	719	764	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	4.6E-11	724	770	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.24E-10	920	980	IPR009057	Homeodomain-like
PROSITE profile	PS50071	13.167	923	983	IPR001356	Homeobox domain
SMART	SM00389	3.7E-12	925	987	IPR001356	Homeobox domain
CDD	cd00086	8.27E-11	926	981	No hit	No description
Pfam	PF00046	6.5E-8	937	977	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	2.1E-11	938	986	IPR009057	Homeodomain-like
PROSITE pattern	PS00027	0	958	981	IPR017970	Homeobox, conserved site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1438 aa Download sequence Send to blast
MGREGSEVSP SKRYPLRSAH TSGRVLRSAS TKDNKACSEP LNDSAAAQSA VKKNRHGSSS 60 VSPNNSVRVL RSASHNKNEA FIEPLNDRTT AKPSANKRKN ASPSQVESPG NTVRVLRSAL 120 KNMDEACTKP LTNKTAGEPT ANKRKNVSPS TLGSHSSSVR VLRSASNYKD ETCTEPLNDS 180 TAVEPAANRR KVASPSKAAG SPNNTVRVLR SALKNKNEAC SEPPNDSTIG QPTAKRRKSD 240 SPLKVSSPVS SARVLRSTSE RKNEACDEPL NGSSAAQPAA RKRKGGTLSK TDSPKICVRV 300 LRSASGKKNE ACSEPVNDSI SAQTPVRRKN CRPSKDRSPK KDYVKICQRV RYILNRMNYQ 360 QSFIQAYASE GWKGQSLEKI RPEKELERAK AEILQCKLRI REAFRNMDAL LSEGKLEESL 420 FDSAGQISSE DLFLFLVPPG DEGWLCPACV CKADSIDALN ELQGSKLSIH DSWEKVFPEA 480 ASLSNGSKQV DASDLPPGRI EDNDYNPELA EGHMVNEDRF SAEDDGKEDS EDDDFDPASP 540 DSSEDQKNEL NSAESDFTSD SDDFCAEIAK SCGQDEVSAS PSLDLINRTD IMKIKVADNR 600 SNEENPNRAF MDMELDKDMV LPISILIQQD KEAGKETYGK ESSGSSDDKE WSGKELLEGS 660 ETDSLGERLH PVKRCSRRAP ARQQNNEHTP QREQLHGSES EQQTEILCSN GSRSTGRKFG 720 PIVTQKLKVH FEKDPYPSRA TKENLAQELG LTFNQVCRWF SSTRHYSRFA SAKKEKHPDN 780 HSSENNDSTT VASMQTREPN AGVMEKLTAD RNVIVPEKPM VQNNLNQCNK EDVPLSGTEI 840 EMESYGQESS DSSDEEWSAF STPRKARLQD NETASPAESL RPAKRCSRRT PAREQNNKHT 900 PQSEPFHGPT SEQQTEVLRS NGSSSKASKY HFGPIVSQKL KVHFEKDPYP SRATKESLAQ 960 ELGLTFNQVS KWFSATRHYS KGAAAKNKNH LGKNTTENDN RTTFDGVQAR EPNVGLMEKT 1020 AADINDIISE KLMVQINLNE GIEEDISPIQ YIRCEERATM IPTAISREVD APGYGHVENF 1080 LQVSSRNTSC EQNVITTPAA ISREVDLPGY VHGENQGHGA PWNTSCEQRV FMSPTTISRE 1140 VGPPGYGPEE NQGSGISWNM SCEQRVSSTT ISREADPPGY GPGENQGNGT SWNTTCQQGM 1200 FMSPATISRE VGPPGYGPGE IQGNGTSLNT SCELRMFTSP TAISREVGPP GFGPGENQGS 1260 GTSWNIRSEQ RMSMSPMTIS REVGPPGYGG ENQGNGTSWS TSYEQGVYMS PTAISREVGP 1320 PGYGPGENQG NIPSWITSCK QRISTSPTAI GPPGYSTVED QGTGGSRNID LEQRVVATPA 1380 IISREVFPPG YGPGENQGSG TSGNVRSPQG RSAEKIEFSD EARKKAIQRE LRRRQKFR

Sequence ? help Back to Top

Protein Sequence Length: 1438 aa Download sequence Send to blast

MGREGSEVSP SKRYPLRSAH TSGRVLRSAS TKDNKACSEP LNDSAAAQSA VKKNRHGSSS  60
VSPNNSVRVL RSASHNKNEA FIEPLNDRTT AKPSANKRKN ASPSQVESPG NTVRVLRSAL  120
KNMDEACTKP LTNKTAGEPT ANKRKNVSPS TLGSHSSSVR VLRSASNYKD ETCTEPLNDS  180
TAVEPAANRR KVASPSKAAG SPNNTVRVLR SALKNKNEAC SEPPNDSTIG QPTAKRRKSD  240
SPLKVSSPVS SARVLRSTSE RKNEACDEPL NGSSAAQPAA RKRKGGTLSK TDSPKICVRV  300
LRSASGKKNE ACSEPVNDSI SAQTPVRRKN CRPSKDRSPK KDYVKICQRV RYILNRMNYQ  360
QSFIQAYASE GWKGQSLEKI RPEKELERAK AEILQCKLRI REAFRNMDAL LSEGKLEESL  420
FDSAGQISSE DLFLFLVPPG DEGWLCPACV CKADSIDALN ELQGSKLSIH DSWEKVFPEA  480
ASLSNGSKQV DASDLPPGRI EDNDYNPELA EGHMVNEDRF SAEDDGKEDS EDDDFDPASP  540
DSSEDQKNEL NSAESDFTSD SDDFCAEIAK SCGQDEVSAS PSLDLINRTD IMKIKVADNR  600
SNEENPNRAF MDMELDKDMV LPISILIQQD KEAGKETYGK ESSGSSDDKE WSGKELLEGS  660
ETDSLGERLH PVKRCSRRAP ARQQNNEHTP QREQLHGSES EQQTEILCSN GSRSTGRKFG  720
PIVTQKLKVH FEKDPYPSRA TKENLAQELG LTFNQVCRWF SSTRHYSRFA SAKKEKHPDN  780
HSSENNDSTT VASMQTREPN AGVMEKLTAD RNVIVPEKPM VQNNLNQCNK EDVPLSGTEI  840
EMESYGQESS DSSDEEWSAF STPRKARLQD NETASPAESL RPAKRCSRRT PAREQNNKHT  900
PQSEPFHGPT SEQQTEVLRS NGSSSKASKY HFGPIVSQKL KVHFEKDPYP SRATKESLAQ  960
ELGLTFNQVS KWFSATRHYS KGAAAKNKNH LGKNTTENDN RTTFDGVQAR EPNVGLMEKT  1020
AADINDIISE KLMVQINLNE GIEEDISPIQ YIRCEERATM IPTAISREVD APGYGHVENF  1080
LQVSSRNTSC EQNVITTPAA ISREVDLPGY VHGENQGHGA PWNTSCEQRV FMSPTTISRE  1140
VGPPGYGPEE NQGSGISWNM SCEQRVSSTT ISREADPPGY GPGENQGNGT SWNTTCQQGM  1200
FMSPATISRE VGPPGYGPGE IQGNGTSLNT SCELRMFTSP TAISREVGPP GFGPGENQGS  1260
GTSWNIRSEQ RMSMSPMTIS REVGPPGYGG ENQGNGTSWS TSYEQGVYMS PTAISREVGP  1320
PGYGPGENQG NIPSWITSCK QRISTSPTAI GPPGYSTVED QGTGGSRNID LEQRVVATPA  1380
IISREVFPPG YGPGENQGSG TSGNVRSPQG RSAEKIEFSD EARKKAIQRE LRRRQKFR

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional repressor involved in the regulation of gibberrelin (GA) signaling. Binds to the 5'-GATC-3' motif of HD16/EL1 promoter. Functions as a positive regulator of GA signaling by suppressing the expression of HD16/EL1, a negative regulator of GA signaling. {ECO:0000269\|PubMed:21951842}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Do014512.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by gibberellin. {ECO:0000269\|PubMed:21951842}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004969941.1	0.0	remodeling and spacing factor 1
Swissprot	Q8H991	0.0	HAZ1_ORYSJ; Homeobox protein HAZ1
TrEMBL	A0A1E5V1T0	0.0	A0A1E5V1T0_9POAL; Homeobox protein HOX1A
STRING	Pavir.Eb03127.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4393	37	68

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19510.1	8e-52	Homeodomain-like protein with RING/FYVE/PHD-type zinc finger domain

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Wen BQ,Xing MQ,Zhang H,Dai C,Xue HW Rice homeobox transcription factor HOX1a positively regulates gibberellin responses by directly suppressing EL1. J Integr Plant Biol, 2011. 53(11): p. 869-78 [PMID:21951842]