PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Do014406.1

Organism

Dichanthelium oligosanthes

Taxonomic ID

888268

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium

Family

TCP

Protein Properties

Length: 330aa MW: 33753.8 Da PI: 4.7962

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Do014406.1	genome	Dichan	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	103.3	4e-32	70	161	7	102
TCP 7 rhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssgkaaksaakskksqk 102 r ++hTkv+gR+RR+R+ a+caar+ L++ LG+++d++t+ WLlqq++pai+++tgt++ +a +++ ++ + + a++ a+++++q Do014406.1 70 RYRDRHTKVEGRGRRIRMAAPCAARVARLTRDLGHKSDGETVRWLLQQSEPAIIAATGTGTVPAIAVTGSDGVLRLPPE----PAPAGAEQQEQQP 161 678********************************************************99998666444444444411....1111111111111 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51369	23.471	71	125	IPR017887	Transcription factor TCP subgroup
Pfam	PF03634	6.9E-25	72	134	IPR005333	Transcription factor, TCP

Sequence ? help Back to Top
Protein Sequence Length: 330 aa Download sequence Send to blast
MESRAPGMGE EHAEALYLAA EAVGNGAAAA VTVAVDAMGS IEAGLPKPEP VPVEFLGGGL 60 QLAHPRPAPR YRDRHTKVEG RGRRIRMAAP CAARVARLTR DLGHKSDGET VRWLLQQSEP 120 AIIAATGTGT VPAIAVTGSD GVLRLPPEPA PAGAEQQEQQ PAPKRRRKLQ PTRAAAGPSA 180 LAPTPPPAAY YPVVADPLLQ ANGGGAISMS SGIAPASGPA AAPAGAIPFL AIPAPAPGAA 240 GDGKQMIPPA AVWMVPQQAG AAGAPNQPTH YWAFPTNPEL FSAANFQQQA VYDAEQLAGN 300 GESQDQQPAG YQLGEGDDEE IAVTDSSSEE

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	162	168	PKRRRKL

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator. Binds the promoter core sequence 5'-GGNCC-3', especially at sites IIa (5'-GGGCCCAC-3') and IIb (5'-GGTCCCAC-3') (essential for meristematic tissue-specificity expression) of the PCNA gene promoter. {ECO:0000269\|PubMed:12000681}.
UniProt	Transcription activator. Binds the promoter core sequence 5'-GGNCC-3', especially at sites IIa (5'-GGGCCCAC-3') and IIb (5'-GGTCCCAC-3') (essential for meristematic tissue-specificity expression) of the PCNA gene promoter. {ECO:0000269\|PubMed:12000681, ECO:0000269\|PubMed:9338963}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Do014406.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025803340.1	1e-172	transcription factor PCF2-like
Swissprot	A2YXQ1	6e-77	PCF2_ORYSI; Transcription factor PCF2
Swissprot	Q6ZBH6	6e-77	PCF2_ORYSJ; Transcription factor PCF2
TrEMBL	A0A1E5V3G2	0.0	A0A1E5V3G2_9POAL; Transcription factor PCF2
STRING	Pavir.Ba01284.1.p	1e-154	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3912	31	67

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G51910.2	1e-33	TCP family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]