PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Do014254.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
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Family | AP2 | ||||||||
Protein Properties | Length: 270aa MW: 29261.8 Da PI: 8.9478 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 34.5 | 5e-11 | 75 | 131 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpse..ng.krkrfslgkfgtaeeAakaaiaarkkleg 55 s+++GV++ k++g+++A+++d ++ g krk + g++ t+e+Aaka++ a++k++g Do014254.1 75 SRFHGVTRLKWSGKYEAHLWDSTShvEGrKRKGKH-GSYVTEEQAAKAHDLAALKYWG 131 789******************55558887788888.999999**************98 PP | |||||||
2 | AP2 | 46.9 | 6.7e-15 | 176 | 229 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpse.ngkrkrfslgkfgtaeeAakaaiaarkkleg 55 s y+GV+++k +g+W A+I e +g +k ++lg f +eeAa+a++ a+ +l+g Do014254.1 176 SSYRGVTRRK-DGKWQARIGRIGEsRG-TKDIYLGIFEIEEEAAEAYDIAAIELRG 229 67*****999.9*******99645466.8*************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 1.5E-7 | 75 | 131 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 6.47E-11 | 75 | 142 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 15.356 | 76 | 141 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.9E-12 | 76 | 147 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.3E-9 | 76 | 141 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 4.2E-10 | 176 | 229 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 4.64E-16 | 176 | 239 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 7.1E-23 | 177 | 243 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.5E-16 | 177 | 237 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 17.859 | 177 | 237 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.8E-7 | 178 | 189 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.8E-7 | 219 | 239 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 270 aa Download sequence Send to blast |
MATVQRQSPA GPTPPDPPAA AQGGEIAALD KQLTVVVVGG GGEERKPGGS DGAAAGGGGK 60 LVAEALRKHA APRSSRFHGV TRLKWSGKYE AHLWDSTSHV EGRKRKGKHG SYVTEEQAAK 120 AHDLAALKYW GTGPNTKLNF NISDYEKEIE VMMTMSQDKF VAYIRRQSSC FSRGTSSYRG 180 VTRRKDGKWQ ARIGRIGESR GTKDIYLGIF EIEEEAAEAY DIAAIELRGV HTVTNFEISN 240 YCEDGLRKLD GPPEVANLEG PSEVMKLAGQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Acts as positive regulator of adventitious (crown) root formation by promoting its initiation. Promotes adventitious root initiation through repression of cytokinin signaling by positively regulating the two-component response regulator RR1. Regulated by the auxin response factor and transcriptional activator ARF23/ARF1. {ECO:0000269|PubMed:21481033}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Do014254.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by auxin. {ECO:0000269|PubMed:21481033}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT035529 | 1e-110 | BT035529.1 Zea mays full-length cDNA clone ZM_BFb0068F10 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004977550.1 | 1e-152 | AP2-like ethylene-responsive transcription factor AIL1 | ||||
Swissprot | Q84Z02 | 3e-62 | CRL5_ORYSJ; AP2-like ethylene-responsive transcription factor CRL5 | ||||
TrEMBL | A0A1E5VIB9 | 0.0 | A0A1E5VIB9_9POAL; AP2-like ethylene-responsive transcription factor AIL1 | ||||
STRING | Si010747m | 1e-151 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP7864 | 35 | 48 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G72570.1 | 1e-51 | AP2 family protein |
Publications ? help Back to Top | |||
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