PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Do014214.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
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Family | MYB | ||||||||
Protein Properties | Length: 210aa MW: 23018.4 Da PI: 11.263 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 46.8 | 6.7e-15 | 19 | 65 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +++WT+eEd l + v+ +G+ +W++I++ ++ R +k+c++rw ++l Do014214.1 19 KKAWTKEEDAVLREQVRAHGPQNWAAISAALP-ERNPKSCRLRWCQHL 65 689*****************************.***********9986 PP | |||||||
2 | Myb_DNA-binding | 48.6 | 1.8e-15 | 74 | 116 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 ++T+eEd+++++++++++++ W+tIa ++ gR+++ +k+rw+++ Do014214.1 74 PFTPEEDDKILHLHRLFPNK-WATIAGFLP-GRSDNAIKNRWNSV 116 79******************.*********.***********987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 20.78 | 14 | 69 | IPR017930 | Myb domain |
SMART | SM00717 | 6.0E-14 | 18 | 67 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 2.09E-29 | 19 | 113 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 8.1E-18 | 19 | 67 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 4.9E-14 | 19 | 65 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.92E-13 | 21 | 65 | No hit | No description |
SMART | SM00717 | 5.8E-13 | 71 | 119 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 18.726 | 73 | 121 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 8.7E-20 | 74 | 117 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.87E-12 | 74 | 117 | No hit | No description |
Pfam | PF00249 | 4.5E-14 | 74 | 117 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 210 aa Download sequence Send to blast |
MAVPDDAAAA GGVRGEGTKK AWTKEEDAVL REQVRAHGPQ NWAAISAALP ERNPKSCRLR 60 WCQHLTPGVD AVRPFTPEED DKILHLHRLF PNKWATIAGF LPGRSDNAIK NRWNSVLSKQ 120 RRRLAAAAAP LCRLPDGTLP LFPLAPDDLR AFGRGAPAPS RTQPVDKGVD LSGACMNLFP 180 LAPGDLVRGT MRARRRGWMW TAAPTRRSPS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3zqc_A | 2e-28 | 22 | 120 | 5 | 102 | MYB3 |
3zqc_D | 2e-28 | 22 | 120 | 5 | 102 | MYB3 |
3zqc_G | 2e-28 | 22 | 120 | 5 | 102 | MYB3 |
3zqc_J | 2e-28 | 22 | 120 | 5 | 102 | MYB3 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Do014214.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004987088.1 | 2e-90 | transcription factor MYB1 | ||||
TrEMBL | A0A1E5W9P7 | 1e-149 | A0A1E5W9P7_9POAL; Transcription factor MYB44 | ||||
STRING | Si039876m | 1e-89 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4960 | 34 | 65 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G50060.1 | 1e-34 | myb domain protein 77 |