PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do014145.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family MYB
Protein Properties Length: 541aa    MW: 60642 Da    PI: 7.6003
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do014145.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding30.21.1e-094361548
                     HHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding 15 avkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     av    g++Wk+Ia+ ++  Rt+ qc +rwqk+l
       Do014145.1  4 AVDACNGKNWKKIAESFP-DRTAVQCLHRWQKVL 36
                     677777889*********.************986 PP
2Myb_DNA-binding58.81.2e-184288148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd+++++ vk++G+  W++Iar +  gR +kqc++rw+++l
       Do014145.1 42 KGPWTQEEDDIIINMVKKYGPQKWSLIARSLD-GRIGKQCRERWHNHL 88
                     79******************************.*************97 PP
3Myb_DNA-binding54.42.8e-1794137146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      +++WT eE+   +da++++G++ W+ Ia+ ++ gRt++++k++w++
       Do014145.1  94 KKAWTYEEERVVADAHRLHGNK-WAEIAKLLP-GRTDNSIKNHWNS 137
                      679*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129411.385136IPR017930Myb domain
SMARTSM007173.9138IPR001005SANT/Myb domain
SuperFamilySSF466895.01E-10146IPR009057Homeodomain-like
CDDcd001679.72E-6336No hitNo description
PfamPF002491.3E-7436IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.7E-18952IPR009057Homeodomain-like
PROSITE profilePS5129431.7613792IPR017930Myb domain
SuperFamilySSF466899.17E-3139135IPR009057Homeodomain-like
SMARTSM007177.1E-174190IPR001005SANT/Myb domain
CDDcd001671.42E-144488No hitNo description
PfamPF139213.0E-1745102No hitNo description
Gene3DG3DSA:1.10.10.601.1E-255395IPR009057Homeodomain-like
SMARTSM007172.5E-1493141IPR001005SANT/Myb domain
PROSITE profilePS5129420.86993143IPR017930Myb domain
CDDcd001671.28E-1096139No hitNo description
Gene3DG3DSA:1.10.10.604.9E-2296143IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 541 aa     Download sequence    Send to blast
LWNAVDACNG KNWKKIAESF PDRTAVQCLH RWQKVLNPEL IKGPWTQEED DIIINMVKKY  60
GPQKWSLIAR SLDGRIGKQC RERWHNHLDP QINKKAWTYE EERVVADAHR LHGNKWAEIA  120
KLLPGRTDNS IKNHWNSSLR KKLGENNVSR TLPVSVHMVR NSLKHENAEL PTAQNHIDLN  180
REPNINSKHL PEIVDHPEHT THLRACNLKD LKSCSDFLSL AMPTSQPEIL CEALEADCSA  240
VALAAMQGLK MDSIHDKGTD INVVCKERLK IDSLNVEVLK LNHVTDTMEY SGSAKAEGKT  300
VNKVCGLSLL NESNFFGSLC YEIPKLEDIV PSHSPVFPKH HLQQCCGDGF QSPVGYATSP  360
VGGDISDQLS VESILKSAAE NFPGTPSILR RRKREKPTHA EDSSLKIDIL NSDSFRTPMG  420
KYTTESPHSF KTKTFLSLGP PDNEGLSAAL GSVDVSPPYR LRSKRMAILK TVEKKHLDFS  480
SDGMDTFDTP VAIKKSASWN TECTNSCTDV LSEQEKKMKE HMIGLETLAK DFAHTTKLDL  540
I
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C3e-641214328159MYB PROTO-ONCOGENE PROTEIN
1h89_C3e-641214328159MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1389396RRRKREKP
2390395RRKREK
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in abiotic stress responses (PubMed:17293435, PubMed:19279197). May play a regulatory role in tolerance to salt, cold, and drought stresses (PubMed:17293435). Transcriptional activator that binds specifically to a mitosis-specific activator cis-element 5'-(T/C)C(T/C)AACGG(T/C)(T/C)A-3', found in promoters of cyclin genes such as CYCB1-1 and KNOLLE (AC Q84R43). Positively regulates a subset of G2/M phase-specific genes, including CYCB1-1, CYCB2-1, CYCB2-2, and CDC20.1 in response to cold treatment (PubMed:19279197). {ECO:0000269|PubMed:17293435, ECO:0000269|PubMed:19279197}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo014145.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by cold, drought and salt stresses. {ECO:0000269|PubMed:17293435}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004961857.10.0transcription factor MYB3R-2
RefseqXP_014660295.10.0transcription factor MYB3R-2
RefseqXP_022681301.10.0transcription factor MYB3R-2
SwissprotQ0JHU71e-170MB3R2_ORYSJ; Transcription factor MYB3R-2
TrEMBLA0A1E5ULL40.0A0A1E5ULL4_9POAL; Myb-related protein 3R-1 (Fragment)
STRINGSi021484m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30993880
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G02320.28e-76myb domain protein 3r-5
Publications ? help Back to Top
  1. Kakar KU, et al.
    A consortium of rhizobacterial strains and biochemical growth elicitors improve cold and drought stress tolerance in rice (Oryza sativa L.).
    Plant Biol (Stuttg), 2016. 18(3): p. 471-83
    [PMID:26681628]