PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do014130.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family FAR1
Protein Properties Length: 716aa    MW: 80906 Da    PI: 6.4341
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do014130.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR170.63.8e-2294180290
        FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                  Y++Y++++GFs+rk k+++ + +++i ++++ Cskeg +e ek +  +++ + ++trt+C+a+++ + +++g+w+v++l+++HnH+la
  Do014130.1  94 LYCDYGHRMGFSIRKGKQSYFTGTKRIRTKDYFCSKEGLKEGEKLT--DANFNDPHTRTNCRAMVRFRVNDHGEWKVIRLVSDHNHNLA 180
                 7****************************************99988..9999***********************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031013.9E-1994180IPR004330FAR1 DNA binding domain
PfamPF105511.0E-25304398IPR018289MULE transposase domain
PROSITE profilePS509669.767587623IPR007527Zinc finger, SWIM-type
PfamPF044343.8E-4595620IPR007527Zinc finger, SWIM-type
SMARTSM005750.0024598625IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 716 aa     Download sequence    Send to blast
MSHVEPAADG ADQAGEVAVV PHDDDGVGGG GGDVASTDSQ VALVASTSGD ERRGEYGDDA  60
ENEGEEAATV QGSKEGTEEL LRKVVYSEEA AYKLYCDYGH RMGFSIRKGK QSYFTGTKRI  120
RTKDYFCSKE GLKEGEKLTD ANFNDPHTRT NCRAMVRFRV NDHGEWKVIR LVSDHNHNLA  180
RPEERHLLRS ARSLIAGRSS SVEAMLYAGY QTQGGSPQLP VGSTSAANNV ENSKQLLLLG  240
YGPTAKPLAV GTGDLQNLVS YLKSRANEDG MFYWDVQLDQ GGRMNNFFWR DGRSRIDYDC  300
FSDVVVFDST YRLSKQNLIC APFVGVNHHW QTTMYGCALL ADESLSAFVW LFKSFLESMG  360
NRHPQSIFTN LDQVVSKAIE EVFPNTCHRI AHWHIQKNAH SRLGALNVSK VFNKMFTKCI  420
QGCDSETEFE ETWAQMIHEF KLQDNKWLKK LYKLKQKWCS ALNKCTFDAG VEYEPQCDSM  480
SNIFSSIADK LTSLSAIGVA VDKQSEDWRE KELEEDTRCL QKPPACIIKH SDILNHAAKV  540
YTHRIYKLFE TDFLDGCGAT KFKELPCEDN NTHHFEMTMQ GRGSRVCTVR LNMSTMELSC  600
SCSKFETMGL LCPHALKALS IKNICKIPES YILKRWTKDA KKWVFNPKQY ESSYQECMDD  660
DAAYCNYVMR YAYDLVTKSQ GQEELRKALW ETLESGEKEL EKYLGNGTQY APSYAT
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo014130.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025806331.10.0protein FAR1-RELATED SEQUENCE 5-like
TrEMBLA0A1E5UT390.0A0A1E5UT39_9POAL; Protein FAR1-RELATED SEQUENCE 5
STRINGPavir.Ab01899.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.14e-82FAR1-related sequence 5