PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do014049.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family bHLH
Protein Properties Length: 617aa    MW: 67319.9 Da    PI: 7.6369
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do014049.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.31.1e-12463509455
                 HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
         HLH   4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                 +h e+Er+RR+++N++f  Lr ++P+ +      K++Ka+ L  A+ YI +Lq
  Do014049.1 463 NHVEAERQRREKLNQRFYALRAVVPNiS------KMDKASLLGDAITYITDLQ 509
                 799***********************66......*****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142153.6E-4958243IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088816.831459508IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.79E-15462513No hitNo description
SuperFamilySSF474591.23E-18462524IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.8E-10463509IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.5E-18463521IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.9E-16465514IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 617 aa     Download sequence    Send to blast
MKMEIDDDGA VGGTGGTWTE EDRALGAAVL GTDAFAYLTK GGGAISEGLV ASSLPDDLQN  60
KLQELVESEG PGTGWNYAIF WQLSRTKSGD LVLGWGDGSC REPRDGEVGA AASAGSDDTK  120
QRMRKRVLQR LHMAFGVADE EDYAPGIDQV TDTEMFFLAS MYFAFPRRAG GPGQAFAAGI  180
PLWIPNNERK VFPANYCYRG FLANAAGFRT IVLVPFESGV LELGSMQHKA ESSDTIQNIR  240
SVFAGASGNK AAVQRHEGNG PTPPERSPGL AKIFGKDLNL GRPSAVPAVG VSKVDERSWE  300
QRSATGGTSL LPNVQKGLQN FTWSQARGLN SHQQKFGNGV LIVSNEATHR NNGAVDSPSA  360
AQFQLQKAPQ LQKLQLQKLP HIQKTPQLVN QQPLQPQVPR QIDFSAGSSS KSGVLVTRAA  420
VLDGETAEVD GLCKEEGPPP VIEDRRPRKR GRKPANGREE PLNHVEAERQ RREKLNQRFY  480
ALRAVVPNIS KMDKASLLGD AITYITDLQK KLKEMETERE RFLESGMVDP RERAPRPEVD  540
IQVVQDEVLV RVMSPMESHP VKKVFQAFEE AEVRVGESKV TGNNNGTVVH SFIIKCPGAE  600
QQTREKVITA MSRAMNS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A6e-28457519264Transcription factor MYC2
5gnj_B6e-28457519264Transcription factor MYC2
5gnj_E6e-28457519264Transcription factor MYC2
5gnj_F6e-28457519264Transcription factor MYC2
5gnj_G6e-28457519264Transcription factor MYC2
5gnj_I6e-28457519264Transcription factor MYC2
5gnj_M6e-28457519264Transcription factor MYC2
5gnj_N6e-28457519264Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1444452RRPRKRGRK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00100PBMTransfer from AT1G01260Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo014049.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025816895.10.0transcription factor bHLH13-like
TrEMBLA0A1E5WCK40.0A0A1E5WCK4_9POAL; Transcription factor bHLH13
STRINGPavir.Ea00030.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP51743860
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01260.31e-68bHLH family protein