PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do013987.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family ERF
Protein Properties Length: 634aa    MW: 69769.8 Da    PI: 7.8858
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do013987.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.29.6e-19421471256
         AP2   2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkklege 56 
                 ++ GVr+++ +grWvAeI+d      +r r +lg+f+tae+Aa+a+++a+++l+ge
  Do013987.1 421 RFVGVRQRP-SGRWVAEIKD----SaQRVRLWLGTFDTAEDAARAYDEAARALRGE 471
                 589******.7*********....4456**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF077623.0E-5253297IPR011676Domain of unknown function DUF1618
PROSITE profilePS5103220.336421478IPR001471AP2/ERF domain
SMARTSM003808.1E-33421484IPR001471AP2/ERF domain
CDDcd000183.54E-29421479No hitNo description
Gene3DG3DSA:3.30.730.102.0E-27421479IPR001471AP2/ERF domain
PfamPF008473.2E-13421471IPR001471AP2/ERF domain
SuperFamilySSF541713.4E-19422479IPR016177DNA-binding domain
PRINTSPR003673.2E-7422433IPR001471AP2/ERF domain
PRINTSPR003673.2E-7444460IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 634 aa     Download sequence    Send to blast
MEDDGSLHDD SSSTGPETQT QVAVDPSLRL LLIPPPIHVE HAAPPPESIL LDPFGYLSDR  60
TNATTTDGRR SMRSGKRIPV TFWAASPPRV SCFTLHCPDL KPSAFGDIPK VLCTEDDLVL  120
LRISIRTQGD HRFAKKNYSY FVYQTGTKNK PPSLTLVRMP PNIACKPFED IAFNDNEVVL  180
LRCRDQDMFF LAVLRRAFIE WQYAKKQFDL HLYNSKAGIW NTKLMHFDSP QDFEYSYANK  240
AITIGGELGS VGWVDLSRGI LICDLLLDNQ SLRYIPLPPP LVPNSPYVCS EHHCPSRPDI  300
DKDKASVIAV DMRNRTLKGV ADFGSGRPLG FGFTYLQSGI SKHLGIWSTS RCIYTGYTGK  360
ASGECELDRG YLAKQLDPRA SSNPIQSSSI YIQRGRELMA AQESGRTVVA TAVTGSYRGR  420
RFVGVRQRPS GRWVAEIKDS AQRVRLWLGT FDTAEDAARA YDEAARALRG ENTRTNFADR  480
ARHCGAARAR LSKNLQHVMA RAAAAGRATA CAGVGEQFAL AAVFRHWQQP AAAAAPQTPR  540
QAEAEADEAA HAAKHAVQPS FVVPRRTEAP PPPSSAALRA GDHPWGADDV DAAELLRAEE  600
ERSFKVSSSV IVPPSFSASS ESELSLDLED FLVS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-13403477371Ethylene-responsive transcription factor ERF096
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo013987.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126173e-66CP012617.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 9 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A1E5VZH00.0A0A1E5VZH0_9POAL; Uncharacterized protein
STRINGPavir.J24431.1.p1e-92(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19790.12e-18related to AP2 11