PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Do013977.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
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Family | LBD | ||||||||
Protein Properties | Length: 231aa MW: 25039.2 Da PI: 6.5841 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 129.8 | 1.2e-40 | 58 | 157 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 +CaaCk+lrr+Ca++Cvlapyfp ++p+kf +h++FGasn++kll++lpe+ r da+ss+vyeAear+rdPvyG++g + +lq+q ++lk++la++++ Do013977.1 58 PCAACKILRRRCADGCVLAPYFPPTEPAKFTTTHRVFGASNIIKLLQELPESSRADAVSSMVYEAEARLRDPVYGCAGAVCRLQKQANELKVQLARAQA 156 7**********************************************************************************************9987 PP DUF260 100 e 100 Do013977.1 157 D 157 5 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 25.34 | 57 | 158 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.1E-40 | 58 | 155 | IPR004883 | Lateral organ boundaries, LOB |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005739 | Cellular Component | mitochondrion |
Sequence ? help Back to Top |
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Protein Sequence Length: 231 aa Download sequence Send to blast |
MDYGNGSTAG TTTAPQQQQY SCPFVSPPSR VSSCSPPPPP PPAVQVVGNV PPTVVLSPCA 60 ACKILRRRCA DGCVLAPYFP PTEPAKFTTT HRVFGASNII KLLQELPESS RADAVSSMVY 120 EAEARLRDPV YGCAGAVCRL QKQANELKVQ LARAQADLLN AQAQHANLLA LVCVEVANHR 180 DSHHHQQQQH HNQSPLMDGG RDLGAAAYQM FYDSDDLDSA TWPDHEAQLW T |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 2e-41 | 57 | 160 | 10 | 113 | LOB family transfactor Ramosa2.1 |
5ly0_B | 2e-41 | 57 | 160 | 10 | 113 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Do013977.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU953937 | 0.0 | EU953937.1 Zea mays clone 1449845 LOB domain protein 11 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004987050.2 | 1e-115 | LOB domain-containing protein 1 | ||||
Swissprot | Q9LQR0 | 2e-64 | LBD1_ARATH; LOB domain-containing protein 1 | ||||
TrEMBL | A0A1E5VLX9 | 1e-170 | A0A1E5VLX9_9POAL; LOB domain-containing protein 1 | ||||
STRING | Pavir.Ib01336.1.p | 1e-119 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2645 | 37 | 90 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G07900.1 | 2e-53 | LOB domain-containing protein 1 |