PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do013917.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family TCP
Protein Properties Length: 293aa    MW: 30679.5 Da    PI: 8.7295
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do013917.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP94.32.5e-2958131374
         TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec..e 74 
                 g+kdrhsk+ T +g+RdRRvRls+++a++++dLqd+LG+ ++sk ++WLl +a+++i++l+ ++++++ +    
  Do013917.1  58 GGKDRHSKVRTVKGLRDRRVRLSVPTAIQLYDLQDRLGLSQPSKVVDWLLDAAQHEIDKLPPLQFPPQAQDlvA 131
                 78*************************************************************99999222221 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5136929.68859117IPR017887Transcription factor TCP subgroup
PfamPF036341.0E-2659129IPR005333Transcription factor, TCP
Sequence ? help Back to Top
Protein Sequence    Length: 293 aa     Download sequence    Send to blast
MISGNLTNEE LAARCTKAEP AAGAAAGAVV AAKNPVPSSR HWPPSTESRI VRVSRVFGGK  60
DRHSKVRTVK GLRDRRVRLS VPTAIQLYDL QDRLGLSQPS KVVDWLLDAA QHEIDKLPPL  120
QFPPQAQDLV AHLPSSMVAP FANGAADRAA AAAANAATGA SAAMGDGDKR HCHGGGIKGL  180
MGLNNSVGLV NGAMPLAHGL YYTAGEPWTN GNVVHDQVSH QGTSPQTVAH HSPFSSLLSL  240
APGPQLVFYS PEGGGFAMKE AADHQFPVDN LDHSQGQLSL SSARSFLHPG SQG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A5e-2064118155Putative transcription factor PCF6
5zkt_B5e-2064118155Putative transcription factor PCF6
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo013917.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9563580.0EU956358.1 Zea mays clone 1561243 TCP family transcription factor containing protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004961521.11e-177transcription factor TCP13 isoform X1
RefseqXP_004961522.11e-177transcription factor TCP13 isoform X1
RefseqXP_012700333.11e-177transcription factor TCP13 isoform X1
TrEMBLA0A1E5VBE40.0A0A1E5VBE4_9POAL; Transcription factor TCP5
STRINGSi022830m1e-176(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP24903584
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60970.15e-41TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 5