PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Do013917.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
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Family | TCP | ||||||||
Protein Properties | Length: 293aa MW: 30679.5 Da PI: 8.7295 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 94.3 | 2.5e-29 | 58 | 131 | 3 | 74 |
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec..e 74 g+kdrhsk+ T +g+RdRRvRls+++a++++dLqd+LG+ ++sk ++WLl +a+++i++l+ ++++++ + Do013917.1 58 GGKDRHSKVRTVKGLRDRRVRLSVPTAIQLYDLQDRLGLSQPSKVVDWLLDAAQHEIDKLPPLQFPPQAQDlvA 131 78*************************************************************99999222221 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51369 | 29.688 | 59 | 117 | IPR017887 | Transcription factor TCP subgroup |
Pfam | PF03634 | 1.0E-26 | 59 | 129 | IPR005333 | Transcription factor, TCP |
Sequence ? help Back to Top |
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Protein Sequence Length: 293 aa Download sequence Send to blast |
MISGNLTNEE LAARCTKAEP AAGAAAGAVV AAKNPVPSSR HWPPSTESRI VRVSRVFGGK 60 DRHSKVRTVK GLRDRRVRLS VPTAIQLYDL QDRLGLSQPS KVVDWLLDAA QHEIDKLPPL 120 QFPPQAQDLV AHLPSSMVAP FANGAADRAA AAAANAATGA SAAMGDGDKR HCHGGGIKGL 180 MGLNNSVGLV NGAMPLAHGL YYTAGEPWTN GNVVHDQVSH QGTSPQTVAH HSPFSSLLSL 240 APGPQLVFYS PEGGGFAMKE AADHQFPVDN LDHSQGQLSL SSARSFLHPG SQG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zkt_A | 5e-20 | 64 | 118 | 1 | 55 | Putative transcription factor PCF6 |
5zkt_B | 5e-20 | 64 | 118 | 1 | 55 | Putative transcription factor PCF6 |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Do013917.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU956358 | 0.0 | EU956358.1 Zea mays clone 1561243 TCP family transcription factor containing protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004961521.1 | 1e-177 | transcription factor TCP13 isoform X1 | ||||
Refseq | XP_004961522.1 | 1e-177 | transcription factor TCP13 isoform X1 | ||||
Refseq | XP_012700333.1 | 1e-177 | transcription factor TCP13 isoform X1 | ||||
TrEMBL | A0A1E5VBE4 | 0.0 | A0A1E5VBE4_9POAL; Transcription factor TCP5 | ||||
STRING | Si022830m | 1e-176 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2490 | 35 | 84 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60970.1 | 5e-41 | TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 5 |