PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do013794.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family ARF
Protein Properties Length: 713aa    MW: 75908.6 Da    PI: 7.0745
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do013794.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B373.32.9e-23124225199
                 EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
          B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 
                 f k+lt+sd+++ g +++p+ +ae++         ++ +  t++ +d +g  W++++iyr++++r++lt+GW+ Fv++++L +gD++vF   + +++ l
  Do013794.1 124 FAKTLTQSDANNGGGFSVPRYCAETIfprldyaADPPVQ--TVVAKDVHGAAWKFRHIYRGTPRRHLLTTGWSTFVNQKKLVAGDSIVFL--RGDGGDL 218
                 89*****************************96555555..8************************************************..3488999 PP

                 EEEEE-S CS
          B3  93 vvkvfrk 99 
                 +++++r+
  Do013794.1 219 HIGIRRA 225
                 ****996 PP
2Auxin_resp109.63.2e-36280363183
  Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                 aa+ as +++ evvY+Prast+eF+v+++ v+ a++v++s+GmRfkmafetedss++++ +Gtv+gv+ +dp+rWp+S+Wr+L+
  Do013794.1 280 AARLASGGQPCEVVYYPRASTPEFCVRAAAVRVAMRVQWSPGMRFKMAFETEDSSRISWfMGTVAGVQVADPIRWPQSPWRLLQ 363
                 67889999**************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.1E-36117227IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019368.76E-29119226IPR015300DNA-binding pseudobarrel domain
CDDcd100174.36E-21123224No hitNo description
PROSITE profilePS5086312.661124226IPR003340B3 DNA binding domain
SMARTSM010194.2E-20124226IPR003340B3 DNA binding domain
PfamPF023622.5E-21124225IPR003340B3 DNA binding domain
PfamPF065076.4E-31280363IPR010525Auxin response factor
PROSITE profilePS5174514.814626706IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 713 aa     Download sequence    Send to blast
MITFADLTEP AAAGAERGVD RQLWLACAGG MCTVPPVGAS VYYFPQGHAE HALGLAGAAD  60
LSAARVPALV PCRVAAVRYM ADQDTDEVFA RIRLVPLRGG GEAGDASLEN DAAAGDEQEK  120
PASFAKTLTQ SDANNGGGFS VPRYCAETIF PRLDYAADPP VQTVVAKDVH GAAWKFRHIY  180
RGTPRRHLLT TGWSTFVNQK KLVAGDSIVF LRGDGGDLHI GIRRAKRGFC GAGGGGDGGE  240
EAPMPGWDHY AGMNMMRGNV SPCEAAKARG KVRPEDVAEA ARLASGGQPC EVVYYPRAST  300
PEFCVRAAAV RVAMRVQWSP GMRFKMAFET EDSSRISWFM GTVAGVQVAD PIRWPQSPWR  360
LLQVTWDEPD LLQNVKRVSP WLVELVSSIP AIHLASFSPP RKKPRIPAYP EFPFEGQLLN  420
PAFPPNPLPH GHNGHHFLHH THPSFFPFPD GSAPAAIQGA RHAQFVPPLS DLHLTHLQSS  480
LLHPGLRRPD HVGPTTPLPA RISTDLTIGG APARDDVSCA LSIGADKKPD AAKPAGLVLF  540
GRTILTQQQM SLSGSGGATS PAATGNSSPN WNAADKGPNA SEGSGSGSGS GVTQNSPTKN  600
APSSERVPWF MDGSQSQAPE LVGLEPGQCK VFVESDTVGR NLDLSALGSF EELYGRLSEM  660
FCMESAELRS RVLYRGGAGD VKHAGDEPFS VFVKSARRLT ILTDAGSDNL GSC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A4e-751938451388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo013794.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9553850.0EU955385.1 Zea mays clone 1530377 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004953169.10.0auxin response factor 8
SwissprotQ6K2230.0ARFH_ORYSJ; Auxin response factor 8
TrEMBLA0A1E5VXR00.0A0A1E5VXR0_9POAL; Auxin response factor
STRINGSi016509m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP51637152
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30080.11e-162auxin response factor 16