PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Do013768.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
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Family | B3 | ||||||||
Protein Properties | Length: 240aa MW: 26617.4 Da PI: 9.864 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 83.8 | 1.5e-26 | 43 | 144 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS.-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesg.rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 f+kv tpsdv+k++rlv+pk+fae+h ++++ l + d +g W+++++y+ +s++yv+tkGW+++v++++L +gD+v F r++++l+ Do013768.1 43 FEKVVTPSDVGKLNRLVVPKHFAEKHlplpgAAARAGGTVLCFHDARGqAAWRFRYSYWSSSQSYVMTKGWSRYVRDKRLAAGDTVSFC---RDGARLF 138 99***************************98555678899*****888789**************************************...4667788 PP EEEE-S CS B3 94 vkvfrk 99 + +r+ Do013768.1 139 IDCRRR 144 888876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 1.2E-34 | 39 | 147 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 5.1E-28 | 41 | 144 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.09E-19 | 41 | 135 | No hit | No description |
SMART | SM01019 | 5.5E-19 | 43 | 145 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 12.717 | 43 | 145 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.5E-23 | 43 | 144 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 240 aa Download sequence Send to blast |
MALTLALESR SRSSDDRREG AAAGGLQAAE GIGDSHGARE RMFEKVVTPS DVGKLNRLVV 60 PKHFAEKHLP LPGAAARAGG TVLCFHDARG QAAWRFRYSY WSSSQSYVMT KGWSRYVRDK 120 RLAAGDTVSF CRDGARLFID CRRRRRSAGA AAMPSPAFLV PPQRQQQQQQ ACFFPQKVAV 180 QVQQHLLVAP RVVVDDEVAA VAMEEEETRR GRCLRLFGVN LELELELRAA GEPLLLDLQL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wid_A | 2e-42 | 40 | 155 | 11 | 128 | DNA-binding protein RAV1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Do013768.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KJ726965 | 3e-95 | KJ726965.1 Zea mays clone pUT3665 ABI3VP1 transcription factor (ABI37) gene, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022681403.1 | 2e-70 | B3 domain-containing protein Os06g0107800 | ||||
Swissprot | Q5VS55 | 7e-55 | Y6078_ORYSJ; B3 domain-containing protein Os06g0107800 | ||||
TrEMBL | A0A1E5VK67 | 1e-173 | A0A1E5VK67_9POAL; B3 domain-containing protein | ||||
STRING | Si008509m | 9e-70 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP12947 | 29 | 34 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G13260.1 | 1e-38 | related to ABI3/VP1 1 |