PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Do013705.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
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Family | MYB_related | ||||||||
Protein Properties | Length: 213aa MW: 23852.5 Da PI: 4.8867 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 25.8 | 2.4e-08 | 74 | 118 | 3 | 44 |
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44 WT+ +l+ +a + + ++ +W+ Iar +g g+++++++ ++ Do013705.1 74 QWTPKQNKLFEQALAVYDKDtpdRWHNIARAVGGGKSAEEVRRYY 118 7******************************************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00717 | 3.6 | 10 | 69 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 6.89E-6 | 10 | 50 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50090 | 4.379 | 14 | 52 | IPR017877 | Myb-like domain |
CDD | cd00167 | 0.00442 | 14 | 52 | No hit | No description |
PROSITE profile | PS51293 | 10.67 | 70 | 126 | IPR017884 | SANT domain |
SMART | SM00717 | 8.5E-8 | 71 | 124 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.7E-6 | 73 | 118 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 6.23E-11 | 74 | 129 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 3.6E-4 | 74 | 128 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 8.58E-6 | 75 | 121 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009630 | Biological Process | gravitropism | ||||
GO:0009793 | Biological Process | embryo development ending in seed dormancy | ||||
GO:0010114 | Biological Process | response to red light | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 213 aa Download sequence Send to blast |
MASGGSSRGS TRGWTQRQNK QFECALAVYD RETPDRWHNV ARYMGGTKSA EEELSSGKVK 60 EMASLSMTSS VRAQWTPKQN KLFEQALAVY DKDTPDRWHN IARAVGGGKS AEEVRRYYEL 120 LEKDIEHIES GKVPFPAYRC PSGAGALGYQ ADRYAEASED LGEQIEDDGE EGRARTEYCL 180 DIVLFQQILQ GISMQRSTGY IFFAAIDDNS VLL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2cjj_A | 3e-26 | 75 | 143 | 11 | 78 | RADIALIS |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. Required for female gametophyte development. {ECO:0000269|PubMed:15634699}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Do013705.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC007858 | 3e-85 | AC007858.1 Oryza sativa (japonica cultivar-group) chromosome 5 clone BAC 10A19I, complete sequence. | |||
GenBank | AC120988 | 3e-85 | AC120988.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OSJNBa0017N18, complete sequence. | |||
GenBank | AK241528 | 3e-85 | AK241528.1 Oryza sativa Japonica Group cDNA, clone: J065171E20, full insert sequence. | |||
GenBank | AP014961 | 3e-85 | AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012613 | 3e-85 | CP012613.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 5 sequence. | |||
GenBank | CT836354 | 3e-85 | CT836354.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCEA043L05, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Swissprot | Q9SIJ5 | 2e-28 | RADL2_ARATH; Protein RADIALIS-like 2 | ||||
TrEMBL | A0A1E5UUT9 | 6e-60 | A0A1E5UUT9_9POAL; Protein RADIALIS-like 3 |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP270 | 38 | 230 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G39250.1 | 2e-29 | RAD-like 1 |
Publications ? help Back to Top | |||
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