PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Do013671.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
|
||||||||
Family | NAC | ||||||||
Protein Properties | Length: 344aa MW: 38776.1 Da PI: 6.9628 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 169.5 | 1.1e-52 | 10 | 139 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvka.eekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskk 96 +ppGfrFhPtdeel+ +yL+kkv+ ++++l +vi+e+d++k+ePwdL+ ++ + ++ewyfFs++dkky+tg+r+nrat++g+Wkatg+dk+++ ++ Do013671.1 10 VPPGFRFHPTDEELLYYYLRKKVAYEPIDL-DVIREIDLNKLEPWDLKDrcRIGTgPQNEWYFFSHKDKKYPTGTRTNRATTAGFWKATGRDKAIFLSN 107 69****************************.9***************943444442456**************************************** PP NAM 97 gelvglkktLvfykgrapkgektdWvmheyrl 128 + +gl+ktLvfy grap+g+ktdW+mheyrl Do013671.1 108 ARRIGLRKTLVFYIGRAPHGKKTDWIMHEYRL 139 ******************************98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 5.75E-59 | 6 | 159 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 58.108 | 10 | 159 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.5E-27 | 11 | 139 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003002 | Biological Process | regionalization | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009834 | Biological Process | plant-type secondary cell wall biogenesis | ||||
GO:0010455 | Biological Process | positive regulation of cell fate commitment | ||||
GO:0048829 | Biological Process | root cap development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 344 aa Download sequence Send to blast |
MHPSGGPLSV PPGFRFHPTD EELLYYYLRK KVAYEPIDLD VIREIDLNKL EPWDLKDRCR 60 IGTGPQNEWY FFSHKDKKYP TGTRTNRATT AGFWKATGRD KAIFLSNARR IGLRKTLVFY 120 IGRAPHGKKT DWIMHEYRLD EENVEIQEDG WVVCRVFKKK NYQRGFNPAE MAALDDDELQ 180 PFQVPVPGAL PTDHKHNPHL MQYEFPSFDP SMQLPQLMNA DQPVQTLLPS QPGVAMAMSS 240 LDVECSQNLM KLTSNGSDGM IHGGGGGGGV DRFTGTTDWS ILDKLLASHQ NLDQLFQGKV 300 STASAAPMAP YHHQLMELGG SSSLQRLPLQ YLGSEAADLL RFPK |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 8e-52 | 8 | 161 | 15 | 167 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 8e-52 | 8 | 161 | 15 | 167 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 8e-52 | 8 | 161 | 15 | 167 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 8e-52 | 8 | 161 | 15 | 167 | NO APICAL MERISTEM PROTEIN |
4dul_A | 8e-52 | 8 | 161 | 15 | 167 | NAC domain-containing protein 19 |
4dul_B | 8e-52 | 8 | 161 | 15 | 167 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcription factor involved in stress response. {ECO:0000250|UniProtKB:Q7F2L3}. |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00250 | DAP | Transfer from AT1G79580 | Download |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Do013671.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AJ833965 | 0.0 | AJ833965.1 Zea mays partial mRNA for hypothetical protein (nac6 gene). |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_004965525.1 | 0.0 | NAC domain-containing protein 76 | ||||
Swissprot | Q5Z6B6 | 1e-121 | NAC76_ORYSJ; NAC domain-containing protein 76 | ||||
TrEMBL | A0A1E5VJR1 | 0.0 | A0A1E5VJR1_9POAL; NAC domain-containing protein 76 | ||||
STRING | Si007822m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3461 | 37 | 81 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G79580.3 | 1e-102 | NAC family protein |
Publications ? help Back to Top | |||
---|---|---|---|
|