PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Do013649.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
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Family | bHLH | ||||||||
Protein Properties | Length: 224aa MW: 24328.5 Da PI: 7.1374 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 12.2 | 0.00033 | 37 | 66 | 1 | 30 |
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC CS HLH 1 rrrahnerErrRRdriNsafeeLrellPka 30 r++ + erE+ Rd++N+ f eL +l ++ Do013649.1 37 RKVHKAEREKHKRDHLNDLFIELGNMLVES 66 678889*******************99984 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 224 aa Download sequence Send to blast |
MVPSERGSVA TAVSTPAADK LLHGPIAGKK CKKAAPRKVH KAEREKHKRD HLNDLFIELG 60 NMLVESLRKE HSNLQNESHY VAIERNELQD ENGMLRKEIS ELQDDLRMRT SSNPAGWGHG 120 TAGLSPPVPH PTSAVFSSQQ AMQPPTIAST VFPLHQALAP SAVIEQSYAT PPPLELRLFP 180 GAASVEVHEP SEGQDAPNHV ARPQASYESG MINVSIQLIA KLGQ |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Do013649.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004984211.1 | 1e-120 | transcription factor BHLH062 | ||||
TrEMBL | A0A1E5UW03 | 1e-163 | A0A1E5UW03_9POAL; Uncharacterized protein | ||||
STRING | Si037016m | 1e-120 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2481 | 38 | 84 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G47640.3 | 4e-20 | bHLH family protein |