PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do013645.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family MYB
Protein Properties Length: 321aa    MW: 34156.7 Da    PI: 8.2091
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do013645.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.37.5e-181461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd+ lv +v+++G+g+W+++++  g+ R+ k+c++rw +yl
       Do013645.1 14 KGPWTPEEDLALVSYVQEHGPGNWRAVPANTGLMRCSKSCRLRWTNYL 61
                     79********************************************97 PP
2Myb_DNA-binding46.96.5e-1567112148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg ++ +Ed l+v++ ++lG++ W++Ia++++  Rt++++k++w+++l
       Do013645.1  67 RGGFSDQEDRLIVHLQALLGNR-WAAIASYLP-ERTDNDVKNYWNTHL 112
                      7889******************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.1E-24564IPR009057Homeodomain-like
PROSITE profilePS5129425.48965IPR017930Myb domain
SuperFamilySSF466894.49E-3011108IPR009057Homeodomain-like
SMARTSM007175.0E-141363IPR001005SANT/Myb domain
PfamPF002499.3E-171461IPR001005SANT/Myb domain
CDDcd001672.29E-121661No hitNo description
Gene3DG3DSA:1.10.10.605.4E-2365116IPR009057Homeodomain-like
SMARTSM007175.9E-1566114IPR001005SANT/Myb domain
PROSITE profilePS5129419.67666116IPR017930Myb domain
PfamPF002491.2E-1367112IPR001005SANT/Myb domain
CDDcd001671.05E-1170112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 321 aa     Download sequence    Send to blast
MGRPPCCDKE GVKKGPWTPE EDLALVSYVQ EHGPGNWRAV PANTGLMRCS KSCRLRWTNY  60
LRPGIRRGGF SDQEDRLIVH LQALLGNRWA AIASYLPERT DNDVKNYWNT HLKKKLLVEQ  120
QQQQQQQLLN QPRAASTPSL PPPPPKGQWE LKLQTDIGLA RRALRDALRV DAAAVGLLGT  180
ITTTSPALSS GDPGAAQAYA LTARSVSSML EAGWAGPAGK QSCAVVGGVV VPAPATPGAA  240
ESASGSSSEL TECSGSISSP SKRAAALAPC QPFAREAEKA AAGVVVPLSE IESWLLEDGC  300
GEQKPAHDGL LLDAARHNFG F
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C8e-271211625128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo013645.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9628481e-168EU962848.1 Zea mays clone 246006 myb transcription factor MYB30 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025794825.11e-142transcription factor MYB30-like
SwissprotP813924e-86MYB06_ANTMA; Myb-related protein 306
TrEMBLA0A1E5UW690.0A0A1E5UW69_9POAL; Myb-related protein 306
STRINGGRMZM2G098179_P011e-130(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22938296
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62470.22e-75myb domain protein 96
Publications ? help Back to Top
  1. Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C
    Expression patterns of myb genes from Antirrhinum flowers.
    Plant Cell, 1991. 3(2): p. 115-25
    [PMID:1840903]