PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do013589.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family SBP
Protein Properties Length: 337aa    MW: 35875.2 Da    PI: 8.3781
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do013589.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP50.36.6e-1645764778
                SSEEETTT--SS--S-STTTT-------S--- CS
         SBP 47 srfhelsefDeekrsCrrrLakhnerrrkkqa 78
                 rfh l efD++krsCr+rL++hn+rrrk+q+
  Do013589.1 45 LRFHLLAEFDDTKRSCRKRLDGHNRRRRKPQP 76
                49***************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5114112.477174IPR004333Transcription factor, SBP-box
SuperFamilySSF1036125.3E-133979IPR004333Transcription factor, SBP-box
Gene3DG3DSA:4.10.1100.101.2E-44461IPR004333Transcription factor, SBP-box
PfamPF031109.0E-94573IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 337 aa     Download sequence    Send to blast
MAAAVAICPV GPAQLRAYCR QPNALYASWP LSLVHASALW SFCLLRFHLL AEFDDTKRSC  60
RKRLDGHNRR RRKPQPDTMA SASFITSQQG LLSFYQFSMF FKSAHGTRFS PFAPPRLDAN  120
WPGVIKTEET PYYTHQIPLG TSNRQHFVGS SSAYAKEGRR FPFLQEGEIS FATGVVLEAP  180
ASAHQPVLKA AAPPESSSGS TGGKMFSSDG LTRVLDSDCA LSLLSAPANS SGIDVSRMVR  240
PTEHVPMAQP VVSSLQFGSS SWFSRPQGSA GGGAAAATAG FPSCPVVVEG EQQQLNTVLG  300
SNDNEMNYGG MFHVGGGGGG GEGSSDGTSS SLPFSWQ
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15673KRSCRKRLDGHNRRRRKP
Functional Description ? help Back to Top
Source Description
UniProtSBP transcriptional regulator probably involved in the domestication of maize. Acts as a transcriptional repressor binding to a 5'-GTAC-3' motif. May repress the growth of lateral branches in length and numbers. {ECO:0000250|UniProtKB:Q49I55}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo013589.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJN5607701e-136JN560770.1 Setaria italica teosinte glume architecture 1 (TGA1) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025819972.11e-149teosinte glume architecture 1-like
SwissprotQ49I571e-119TGA1B_MAIZE; Teosinte glume architecture 1
TrEMBLA0A3L6RNU11e-153A0A3L6RNU1_PANMI; Teosinte glume architecture 1
STRINGPavir.J28847.1.p1e-153(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP17553795
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50670.11e-14SBP family protein
Publications ? help Back to Top
  1. Schnable PS, et al.
    The B73 maize genome: complexity, diversity, and dynamics.
    Science, 2009. 326(5956): p. 1112-5
    [PMID:19965430]