PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Do013581.1

Organism

Dichanthelium oligosanthes

Taxonomic ID

888268

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium

Family

NAC

Protein Properties

Length: 439aa MW: 49537.3 Da PI: 7.9146

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Do013581.1	genome	Dichan	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	114.5	1.1e-35	45	187	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk......leleevikevd....iykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra........tksg 81 lp+G++F+Ptd+el+ e+L++kv+++ +++ +i+++d i++++P++Lp v+ + + +fF++ +k+y+tg+rk+r+ + Do013581.1 45 LPAGVKFDPTDQELI-EHLEAKVKDEGsrshplIDE--FIPTIDgedgICYTHPEKLP-GVTRDGLSKHFFHRPSKAYTTGTRKRRKiqtecdvhKGET 139 799**********.99**999677544333..3444433445******.555666799**************7566666443377 PP NAM 82 yWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128 +W++tgk+++v++ +g+++g+kk+Lv+y g+++k+ekt+Wvmh+y+l Do013581.1 140 RWHKTGKTRPVMV-NGRQKGCKKILVLYtnFGKHRKPEKTNWVMHQYHL 187 8********.999*******5547999999*******98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.44E-39	39	206	IPR003441	NAC domain
PROSITE profile	PS51005	34.126	45	206	IPR003441	NAC domain
Pfam	PF02365	3.1E-16	46	187	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 439 aa Download sequence Send to blast
MNRGHSSSSS KLINEKLEEH RISTAKHCPH CGEKIDSKPK DWVGLPAGVK FDPTDQELIE 60 HLEAKVKDEG SRSHPLIDEF IPTIDGEDGI CYTHPEKLPG VTRDGLSKHF FHRPSKAYTT 120 GTRKRRKIQT ECDVHKGETR WHKTGKTRPV MVNGRQKGCK KILVLYTNFG KHRKPEKTNW 180 VMHQYHLGDL EEEKEGELVV CKIFYQTQPR QCSWSSDRSA AAAVAATTVQ EQRRRDSGSG 240 SCSSRDHEVS ATSFPAGYTV TAAVEMQQHM KQPADHFSFA PFRKTFDQEV GIGGDQVPSN 300 QLGRSEQHHA GQEQQQHRPV LATTAVPATA FLISRPSNPV STIVPPAMQH ASVVLDHDQF 360 HVPAILLHHH DKFQNMQQQH QHQQQQPQQK LDRRSAGLEE LIMGCTSSTG TKGETSIPQS 420 QETEWPYPYW PPDNQDHHG

Sequence ? help Back to Top

Protein Sequence Length: 439 aa Download sequence Send to blast

MNRGHSSSSS KLINEKLEEH RISTAKHCPH CGEKIDSKPK DWVGLPAGVK FDPTDQELIE  60
HLEAKVKDEG SRSHPLIDEF IPTIDGEDGI CYTHPEKLPG VTRDGLSKHF FHRPSKAYTT  120
GTRKRRKIQT ECDVHKGETR WHKTGKTRPV MVNGRQKGCK KILVLYTNFG KHRKPEKTNW  180
VMHQYHLGDL EEEKEGELVV CKIFYQTQPR QCSWSSDRSA AAAVAATTVQ EQRRRDSGSG  240
SCSSRDHEVS ATSFPAGYTV TAAVEMQQHM KQPADHFSFA PFRKTFDQEV GIGGDQVPSN  300
QLGRSEQHHA GQEQQQHRPV LATTAVPATA FLISRPSNPV STIVPPAMQH ASVVLDHDQF  360
HVPAILLHHH DKFQNMQQQH QHQQQQPQQK LDRRSAGLEE LIMGCTSSTG TKGETSIPQS  420
QETEWPYPYW PPDNQDHHG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	3e-12	43	187	13	140	Stress-induced transcription factor NAC1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator involved in xylem formation (PubMed:25265867, PubMed:25535195). Promotes the expression of the secondary wall-associated transcription factor MYB46 (PubMed:25265867). Functions upstream of NAC030/VND7, a master switch of xylem vessel differentiation (PubMed:25265867, PubMed:25535195). Acts as upstream regulator of NAC101/VND6 and LBD30/ASL19 (PubMed:25535195). {ECO:0000269\|PubMed:25265867, ECO:0000269\|PubMed:25535195}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00460	DAP	Transfer from AT4G29230	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Do013581.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KM017005	0.0	KM017005.1 UNVERIFIED: Miscanthus lutarioriparius NAC7-like mRNA, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025818121.1	0.0	NAC domain-containing protein 75-like isoform X1
Refseq	XP_025818123.1	0.0	NAC domain-containing protein 75-like isoform X1
Swissprot	Q9M0F8	1e-152	NAC75_ARATH; NAC domain-containing protein 75
TrEMBL	A0A1E5VUT4	0.0	A0A1E5VUT4_9POAL; NAC domain-containing protein 73
STRING	Pavir.Eb00261.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1453	38	117

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G29230.1	1e-117	NAC domain containing protein 75

Publications ? help Back to Top
Droc G, et al. OryGenesDB: a database for rice reverse genetics. Nucleic Acids Res., 2006. 34(Database issue): p. D736-40 [PMID:16381969] Sakamoto S,Mitsuda N Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant. Plant Cell Physiol., 2015. 56(2): p. 299-310 [PMID:25535195]