PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Do013571.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
|
||||||||
Family | bHLH | ||||||||
Protein Properties | Length: 309aa MW: 32265.7 Da PI: 8.6819 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 44.7 | 2.4e-14 | 119 | 170 | 1 | 55 |
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +r++h ++Er+RR+ +N+ ++ Lr+l+P++ + ++ + a+++ A++Y+k+L+ Do013571.1 119 QRMTHIAVERNRRRLMNDHLASLRSLIPSS---YIPRGDQATVVGGAIDYVKQLE 170 79****************************...9*******************96 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 3.14E-15 | 110 | 177 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 6.51E-14 | 117 | 173 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 2.2E-14 | 117 | 173 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 15.154 | 118 | 169 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.5E-11 | 119 | 170 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.3E-9 | 124 | 175 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 309 aa Download sequence Send to blast |
MGVATTAAVM EQWADQQAAA TTSAAVAAAA QMPFLALLQG AGVMLEEGPQ DGRKRNAAAF 60 AADLDLLESC VTQAAAAAGA PVASAPATRA ERRRKRPRPR TRAAPPPEKR RKPEEAESQR 120 MTHIAVERNR RRLMNDHLAS LRSLIPSSYI PRGDQATVVG GAIDYVKQLE QQLVALQAAS 180 AARRGGAGAG VGTAATAASD GVFVSPQYAS YSEARGCCGG VDVEAMAAVG GHVRVRVAGR 240 RWPGRLVRAV AALEDLRLAV LHLAVTSVGH DAVVYCFNLK MEEGCEVATA DEVAAVVHQI 300 FAYAGGTCC |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 91 | 101 | RRRKRPRPRTR |
2 | 93 | 99 | RKRPRPR |
3 | 93 | 111 | RKRPRPRTRAAPPPEKRRK |
4 | 94 | 98 | KRPRP |
5 | 119 | 130 | RMTHIAVERNRR |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Do013571.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_025798239.1 | 1e-153 | transcription factor bHLH57-like | ||||
TrEMBL | A0A1E5VVL3 | 0.0 | A0A1E5VVL3_9POAL; Uncharacterized protein | ||||
STRING | Si040271m | 1e-145 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP7957 | 33 | 44 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G46810.1 | 3e-33 | bHLH family protein |