PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Do013567.1

Organism

Dichanthelium oligosanthes

Taxonomic ID

888268

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium

Family

GRAS

Protein Properties

Length: 795aa MW: 89144.3 Da PI: 7.1935

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Do013567.1	genome	Dichan	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	390.9	1.4e-119	420	791	1	374
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaN 99 l++ L++cA+av+++d + a++lL+++++++ p+gd +qRla++f+ +L+arla+++s+ly++l +++t+ s+ l+a++l+ ++P+ ++sh++ N Do013567.1 420 LRTILIHCAQAVAADDRRTANELLKQIRQHSKPNGDGTQRLAHCFADGLEARLAGTGSQLYHKLVAKRTT---ASDMLKAYHLYLAACPFKRLSHFLSN 515 5789**********************************************************999999...9********************* PP GRAS 100 qaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrv 196 q+Il ++++++vHiiDf+i G+QWp+L++ L++R++gpp lR+Tg++ p++g +e++eetg+rLa++A++++vpfe++ +a+++e++++e+L+v Do013567.1 516 QTILSMTKNASKVHIIDFGIYFGFQWPCLIRRLSKREGGPPVLRVTGIDVPQPGfrPTERIEETGQRLAEYAKKFNVPFEYQG-IASKWETIRVEDLKV 613 *************************************************9*************************.7********** PP GRAS 197 kpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreiv 295 ++E+++Vn+ ++ +l de+v+++s+r++vL+++++++P ++++ + +++ + F +rf eal ++salfd+le+++pr++ +r+ +Er l+gre+ Do013567.1 614 GKDEVVIVNCLYRFRNLIDETVAVDSPRNRVLNTIRQVNPAIFIHGIVNGSYSVPFFITRFREALFHFSALFDMLETNVPRDDPQRALIERDLFGREAL 712 *********************************************************************************************** PP GRAS 296 nvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 nv+aceg++r+er et+++W+ r +aGF + pl+++++++ak ++ ++ + + ++e+sg+l++gWk+r ++++S W+ Do013567.1 713 NVIACEGSDRVERPETYKQWQVRNLRAGFVQSPLNQEIVMKAKDKVKDIYHKDFVIDEDSGWLLQGWKGRIIYAISTWK 791 **********************************************888***********************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	68.648	394	771	IPR005202	Transcription factor GRAS
Pfam	PF03514	4.9E-117	420	791	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 795 aa Download sequence Send to blast
MADVKAETAT ASTKHLSASY TLKVQQRRTD LPDPATTSGG SSHAGEEAGS GLPSEVSWRS 60 PMGLDNTYGD LSGMFCGSLS YDGYTDHSSS SDYFRFTDPL PAVVPQMAAE PYSNPSSTVS 120 RANTETDNPE DWEFVSDESL NYISRMLMEE DIDEKVSMYQ AESAALRAAA KPFYDILGHK 180 FPPSPDHQVT PWSMDRPCES GSNSRTQSVA STVTSSSVGG AVDSNRRYDV GRSEQSESYR 240 GLCGQSSQPF VGPSRDTCSA VGVLEDPLIT NGRIPEYLFE SLPTWDFRRG IEEAQKFLPV 300 GNKLVIDLEA SGVARPQEAR KDVSLNARKA DVLNTKKNRQ SGDLDLIEGR NIKQSAFCSD 360 EPDWIEMFDE LLRQTEKKAT DLRELMRNEA SKNSQVTQTK GPSGPRSRGR KPTKKDVVDL 420 RTILIHCAQA VAADDRRTAN ELLKQIRQHS KPNGDGTQRL AHCFADGLEA RLAGTGSQLY 480 HKLVAKRTTA SDMLKAYHLY LAACPFKRLS HFLSNQTILS MTKNASKVHI IDFGIYFGFQ 540 WPCLIRRLSK REGGPPVLRV TGIDVPQPGF RPTERIEETG QRLAEYAKKF NVPFEYQGIA 600 SKWETIRVED LKVGKDEVVI VNCLYRFRNL IDETVAVDSP RNRVLNTIRQ VNPAIFIHGI 660 VNGSYSVPFF ITRFREALFH FSALFDMLET NVPRDDPQRA LIERDLFGRE ALNVIACEGS 720 DRVERPETYK QWQVRNLRAG FVQSPLNQEI VMKAKDKVKD IYHKDFVIDE DSGWLLQGWK 780 GRIIYAISTW KPKNN

Sequence ? help Back to Top

Protein Sequence Length: 795 aa Download sequence Send to blast

MADVKAETAT ASTKHLSASY TLKVQQRRTD LPDPATTSGG SSHAGEEAGS GLPSEVSWRS  60
PMGLDNTYGD LSGMFCGSLS YDGYTDHSSS SDYFRFTDPL PAVVPQMAAE PYSNPSSTVS  120
RANTETDNPE DWEFVSDESL NYISRMLMEE DIDEKVSMYQ AESAALRAAA KPFYDILGHK  180
FPPSPDHQVT PWSMDRPCES GSNSRTQSVA STVTSSSVGG AVDSNRRYDV GRSEQSESYR  240
GLCGQSSQPF VGPSRDTCSA VGVLEDPLIT NGRIPEYLFE SLPTWDFRRG IEEAQKFLPV  300
GNKLVIDLEA SGVARPQEAR KDVSLNARKA DVLNTKKNRQ SGDLDLIEGR NIKQSAFCSD  360
EPDWIEMFDE LLRQTEKKAT DLRELMRNEA SKNSQVTQTK GPSGPRSRGR KPTKKDVVDL  420
RTILIHCAQA VAADDRRTAN ELLKQIRQHS KPNGDGTQRL AHCFADGLEA RLAGTGSQLY  480
HKLVAKRTTA SDMLKAYHLY LAACPFKRLS HFLSNQTILS MTKNASKVHI IDFGIYFGFQ  540
WPCLIRRLSK REGGPPVLRV TGIDVPQPGF RPTERIEETG QRLAEYAKKF NVPFEYQGIA  600
SKWETIRVED LKVGKDEVVI VNCLYRFRNL IDETVAVDSP RNRVLNTIRQ VNPAIFIHGI  660
VNGSYSVPFF ITRFREALFH FSALFDMLET NVPRDDPQRA LIERDLFGRE ALNVIACEGS  720
DRVERPETYK QWQVRNLRAG FVQSPLNQEI VMKAKDKVKD IYHKDFVIDE DSGWLLQGWK  780
GRIIYAISTW KPKNN

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hyz_A	3e-50	424	791	8	375	GRAS family transcription factor containing protein, expressed
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Do013567.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT061176	0.0	BT061176.1 Zea mays full-length cDNA clone ZM_BFb0119A04 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004984720.1	0.0	scarecrow-like protein 9
Refseq	XP_004984721.1	0.0	scarecrow-like protein 9
TrEMBL	A0A3L6S7Z0	0.0	A0A3L6S7Z0_PANMI; Scarecrow-like protein 9
STRING	Pavir.J32327.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1505	38	118

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07530.1	0.0	SCARECROW-like 14