PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Do013479.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
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Family | bHLH | ||||||||
Protein Properties | Length: 411aa MW: 42940.1 Da PI: 8.1466 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 40 | 7.1e-13 | 339 | 384 | 6 | 55 |
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++Er RR +i +++ +L+el+P+ k + a++L +Av+YIk+Lq Do013479.1 339 SIAERVRRTKISERIRKLQELVPNM----EKQTNTADMLDLAVDYIKDLQ 384 689*********************7....467*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 15.212 | 333 | 383 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 4.97E-16 | 336 | 395 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 4.03E-13 | 337 | 388 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 3.6E-15 | 338 | 392 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 7.1E-13 | 339 | 389 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 7.5E-10 | 339 | 384 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 411 aa Download sequence Send to blast |
MYGSPVPKDL NLPAAQPQPT GAGARTPPPP PQMSSPGLLR YRSAPSTLLG EMMCGDQDFP 60 AAAAAAGAAG HGGPDHHAAA DNVLARFLAG HHAEIPDCKP PRPAAAAHFM EDAASMAASQ 120 QQQQLMYQSQ QQQMAAMEGL YRNVSSGGTE HGATVGAGNN LLRQSSSPAG FLNHLNMDNG 180 YGNILRAGMA GGFRNGVSDA RLEGQLSFSS RQGSVMSQIS EVGSEELDGG SSPEAAGSNG 240 AHPRGGYSGI PGYPMGGAWT DEPSPTSPGA KRPRDSGGAA PQNGQPQPLA PQLSLPGGNN 300 GVGKQASAEM AVIEKFLQFQ DAVPCKIRAK RGCATHPRSI AERVRRTKIS ERIRKLQELV 360 PNMEKQTNTA DMLDLAVDYI KDLQKQVKVL NDGRASCTCS AGKLLQNQFS S |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Do013479.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU969962 | 0.0 | EU969962.1 Zea mays clone 337883 helix-loop-helix DNA-binding domain containing protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004957179.1 | 0.0 | transcription factor bHLH130 isoform X2 | ||||
TrEMBL | A0A1E5W6S1 | 0.0 | A0A1E5W6S1_9POAL; Transcription factor bHLH130 | ||||
STRING | GRMZM2G085467_P02 | 0.0 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1884 | 38 | 103 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G42280.1 | 4e-50 | bHLH family protein |