PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do013439.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family WRKY
Protein Properties Length: 404aa    MW: 43066.8 Da    PI: 7.3097
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do013439.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY105.43.1e-33192249259
                 --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
        WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                 +Dgy+WrKYGqK vk+s+fprsYYrCt+++Cpvkk+vers +d  vv++tYeg+H+h+
  Do013439.1 192 EDGYRWRKYGQKAVKNSPFPRSYYRCTTQKCPVKKRVERSYQDAAVVITTYEGKHTHP 249
                 8********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.805.7E-35176251IPR003657WRKY domain
SuperFamilySSF1182903.4E-29183251IPR003657WRKY domain
PROSITE profilePS5081131.95186251IPR003657WRKY domain
SMARTSM007743.2E-39191250IPR003657WRKY domain
PfamPF031062.9E-26192249IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 404 aa     Download sequence    Send to blast
MSGARHDHAG GHHHQYHLSG DFQFHDELAS LFAQRTDALT PPMQNPWFTV TDYLQAGAAT  60
PLDYDTFTGD FDVPAVDEDV KRELVVDTAG AATGSGGGAT TVAAPLTPNS MSMSSTSSEA  120
CGAGAGAGEE SAGKCKKEEW EESKDGSVAA KGDGEGEEKN KKGAAKGKGK GEKRPRQPRF  180
AFMTKSEVDH LEDGYRWRKY GQKAVKNSPF PRSYYRCTTQ KCPVKKRVER SYQDAAVVIT  240
TYEGKHTHPI PATLRGSSHL LAAHHHANLH NPHFRMPPPL AAGAGLAFRP NGGANSFDAL  300
GLLQQQCHHN AMHQQLVSGA ASAAVSGMQQ VNAAMPSHAL PADHQHGLGL SAIVGTAGAT  360
ATATAVTSAP LRMQHFMAQD YAGLLQDMFP SFVQNNDGGD NHRH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-26182252878Probable WRKY transcription factor 4
2lex_A2e-26182252878Probable WRKY transcription factor 4
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo013439.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025807851.11e-167uncharacterized protein LOC112886239
TrEMBLA0A1E5VKW30.0A0A1E5VKW3_9POAL; Putative WRKY transcription factor 71
STRINGSi022220m1e-166(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62337173
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G29860.13e-47WRKY DNA-binding protein 71