PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do013404.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family FAR1
Protein Properties Length: 662aa    MW: 74378.9 Da    PI: 4.9143
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do013404.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR123.91.4e-0754106252
        FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk..teker 52 
                 fY  Y+++vGF+ r  ++++s  +ge ++++f C +  + +++ k   +e+ +
  Do013404.1  54 FYYGYGERVGFKARAGAHRRSVGDGEKIMQRFLCWRGNYGNRSGKGkdSEEGK 106
                 9*********************************9865555555441133333 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031017.0E-554107IPR004330FAR1 DNA binding domain
PROSITE profilePS511529.73242302IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 662 aa     Download sequence    Send to blast
MMEVVAKDGA GGKWKVSKLV VEHSHDLQVA PGDVAATVPA LGMEFDSVDD AKGFYYGYGE  60
RVGFKARAGA HRRSVGDGEK IMQRFLCWRG NYGNRSGKGK DSEEGKEAEE VVEAAPAAAT  120
GKRKGEPYKT RSRNPGKKDA EVIEVEKGVG MGDAENGLEV QNGRGSRRGR RKKGVVEQDG  180
ESIAGLEAEK DVVQDAGAAS DHEEEEEKDQ EGVEEEVQVE VKRGRGRPRK TVTEDNTQQA  240
CVLRELGVRA SQYSNEERKK ILSKYLSKRQ SRPASSRPNK IASRQALAER RKRGDGGRFL  300
SSEGQLPSQQ PLERRSKRLE KQNLKMEEKA ESKEDERIEA EPDPEDEVVA GPGGEPKIGM  360
VFLNEDKAYE FYVNYAGAEG WLYDHEEEDF ISSWEILSEK YNLKDNEWLS KLYEDRERWA  420
LPYGHDTFCA DIAATLRSDN TDTILKDLLK PEVDLRNFFN SYDKFLEEKR LAEQQADYLG  480
AQMTQRVAPL RLLWQAANSY TPTLFEMFRM EFEQISNCMV YSCAKASESI EAYAFLENQY  540
EQLVEQVEVL LQAKLQDKSS LSTILKGHQP HLLQSEAPYV AQQFGLGSLQ GFPGMSPFGQ  600
IQEPTPLQQP SHLQPPPFHN GPQIPQAPPP DIQSLQFLSS NPQLGHQSTD QGQYTIPVWD  660
FL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1221229KRGRGRPRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo013404.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004981561.41e-177protein FAR1-RELATED SEQUENCE 5
TrEMBLA0A1E5UM030.0A0A1E5UM03_9POAL; Uncharacterized protein
STRINGSb01g006380.11e-175(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP148331318
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.13e-16FAR1-related sequence 5