PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do013239.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family NAC
Protein Properties Length: 379aa    MW: 42170 Da    PI: 8.0613
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do013239.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM168.32.5e-52351651128
         NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvkaeek.ewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk. 95 
                 +ppGfrFhPtdeel+ +yL+kkv++++++l +vi+e+d++k+ePwdL+   ++ ++ + ewyfFs++dkky+tg+r+nrat++g+Wkatg+dk+++   
  Do013239.1  35 VPPGFRFHPTDEELLYYYLRKKVAHEPIDL-DVIREIDLNKLEPWDLKDrcRIGTGPQdEWYFFSHKDKKYPTGTRTNRATTAGFWKATGRDKAIFLGn 132
                 69****************************.9***************943455444445*************************************976 PP

         NAM  96 kgelvglkktLvfykgrapkgektdWvmheyrl 128
                  g+ +gl+ktLvfy+grap+g+ktdW+mheyrl
  Do013239.1 133 AGRRIGLRKTLVFYTGRAPHGKKTDWIMHEYRL 165
                 7888***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.88E-5928187IPR003441NAC domain
PROSITE profilePS5100558.97335187IPR003441NAC domain
PfamPF023659.1E-2836165IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 379 aa     Download sequence    Send to blast
CCSCFQAEHN QAKSRKVPFQ GEEASMHPSC SPLTVPPGFR FHPTDEELLY YYLRKKVAHE  60
PIDLDVIREI DLNKLEPWDL KDRCRIGTGP QDEWYFFSHK DKKYPTGTRT NRATTAGFWK  120
ATGRDKAIFL GNAGRRIGLR KTLVFYTGRA PHGKKTDWIM HEYRLDDDKV EVPITEDGWV  180
VCRVFMKKSI QRGLDQQGMV AAADDRELQS FQHSPRSATT PVDKKHGLHQ LMHGGFPGAF  240
DPSLHLPNLT SAEAPLAGAP AFMSGTPAVA VNPLDMGSSP LHNLLKLTTS CGTAAGDMLL  300
NNADRFSAAA ADWSILDKLL ASHQNLDQLF HGKFGGTAAV GVPHHYQQQQ LMGMSASSLQ  360
RLPLHYLGCE TNDLLKFSM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A8e-503318915167NO APICAL MERISTEM PROTEIN
1ut4_B8e-503318915167NO APICAL MERISTEM PROTEIN
1ut7_A8e-503318915167NO APICAL MERISTEM PROTEIN
1ut7_B8e-503318915167NO APICAL MERISTEM PROTEIN
3swm_A1e-493318918170NAC domain-containing protein 19
3swm_B1e-493318918170NAC domain-containing protein 19
3swm_C1e-493318918170NAC domain-containing protein 19
3swm_D1e-493318918170NAC domain-containing protein 19
3swp_A1e-493318918170NAC domain-containing protein 19
3swp_B1e-493318918170NAC domain-containing protein 19
3swp_C1e-493318918170NAC domain-containing protein 19
3swp_D1e-493318918170NAC domain-containing protein 19
4dul_A8e-503318915167NAC domain-containing protein 19
4dul_B8e-503318915167NAC domain-containing protein 19
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo013239.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9530451e-168EU953045.1 Zea mays clone 1377565 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025827212.10.0NAC domain-containing protein 76-like
TrEMBLA0A1E5VY610.0A0A1E5VY61_9POAL; NAC domain-containing protein 76 (Fragment)
STRINGPavir.Ab01037.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP34613781
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G79580.34e-89NAC family protein