PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do013234.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family MYB
Protein Properties Length: 523aa    MW: 57893.7 Da    PI: 4.4542
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do013234.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding60.82.8e-1969116148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +g+WT+eEd++l+d+v+ +G g+W+ + r  g++R++k+c++rw ++l
       Do013234.1  69 KGPWTPEEDKRLKDYVEAHGEGNWNQVQRNAGLNRCGKSCRLRWANHL 116
                      79******************************************9986 PP
2Myb_DNA-binding42.51.5e-13122165146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      +g++ +eE +++++ + ++G++ W++ a++++ gRt++++k++w++
       Do013234.1 122 KGPFDAEEVDKIIKFHIMWGNK-WAKMASHLP-GRTDNEIKNYWNT 165
                      799*******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129424.93564120IPR017930Myb domain
SuperFamilySSF466898.24E-3066163IPR009057Homeodomain-like
SMARTSM007175.8E-1668118IPR001005SANT/Myb domain
PfamPF002494.1E-1769116IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.0E-2470123IPR009057Homeodomain-like
CDDcd001672.55E-1271116No hitNo description
SMARTSM007178.6E-15121169IPR001005SANT/Myb domain
PROSITE profilePS5129417.98121171IPR017930Myb domain
PfamPF002492.3E-12122165IPR001005SANT/Myb domain
CDDcd001673.42E-10124167No hitNo description
Gene3DG3DSA:1.10.10.605.7E-23124169IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 523 aa     Download sequence    Send to blast
MTVKVEQEPA LELPPKAEAE AGADEFSPPL SSGEEEEEDD EEDEDETDSE GSEGDDDGAG  60
NGGAPPLRKG PWTPEEDKRL KDYVEAHGEG NWNQVQRNAG LNRCGKSCRL RWANHLRPDL  120
KKGPFDAEEV DKIIKFHIMW GNKWAKMASH LPGRTDNEIK NYWNTRLKRH QRAGLPIYPE  180
YLLSRVPDQE MNCHTPDDSR GKKRSNELPQ EKVIGMDDLV GDFMVFQHLD YGKDPVVPTN  240
PLKRHASTGD LSSTGDLSCV QMTGNTEQTF YSNDLNHVLT KSQSVPVGSA IASSYTLFDA  300
NPSTSGTIHK SMKTELPSFQ NYDFSSGWLL QCPSAPHVEQ HIDTFIQSPE SISSQNTGLL  360
GAIVNKVDVL DGPTESKRFF EMTVPPFGYN PVSQSGYPSS SVIGDCEAEA HPFAEIQASN  420
SPSGGSSDAI FSFSKCYPNA SFSDSGVPFS SLEASFLNDD SLLSKEQSYL YPEEPILSKE  480
QPYLYPEELK HLTGQWLDSS PWKSVPGAYN KPDFPNKPDF PGQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A6e-27631691106B-MYB
1h8a_C1e-266516923126MYB TRANSFORMING PROTEIN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo013234.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHF6794391e-117HF679439.1 Saccharum hybrid cultivar Co 86032 mRNA for ScMYB33 protein.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025812565.10.0transcription factor GAMYB-like isoform X1
TrEMBLA0A1E5VKW60.0A0A1E5VKW6_9POAL; Transcription factor GAMYB
STRINGPavir.Da00534.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP129022331
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06100.14e-58myb domain protein 33