PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do013214.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family SRS
Protein Properties Length: 300aa    MW: 30684.9 Da    PI: 7.8824
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do013214.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF702211.91.6e-651002413153
      DUF702   3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsalsstklssa..eskke 99 
                 +gt+sCqdCGnqakkdCah+RCRtCCksrgfdC thv+stWvpaakrrerq+qla+         a++ skr r+ + +   ++++t++ss+  ++++ 
  Do013214.1 100 AGTISCQDCGNQAKKDCAHMRCRTCCKSRGFDCPTHVRSTWVPAAKRRERQHQLATG--------AAEPSKRLRDAQPS---STTATTTSSGeqQQQMA 187
                 6899************************************************99987........45678888886443...33444444440045556 PP

      DUF702 100 letsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGle 153
                 +  +++P+evsse vfrcvr++ vd++++e+aYqt+vsi+GhvfkGiL+d G++
  Do013214.1 188 MAGERFPREVSSEVVFRCVRLGPVDEADAEVAYQTSVSIAGHVFKGILHDIGPD 241
                 77788***********************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF051422.2E-60102241IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016238.2E-28104146IPR006510Zinc finger, lateral root primordium type 1
TIGRFAMsTIGR016245.9E-21192240IPR006511Lateral Root Primordium type 1, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009938Biological Processnegative regulation of gibberellic acid mediated signaling pathway
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 300 aa     Download sequence    Send to blast
MAGFPLGGGG GGHGHHGRGD HHPHVTSGSD SATAAAAAAA AYLYTASAAA PRGGGFQLWP  60
HHPAQEHHHF YAPNIIRFAD DPAAAGSSGG GRGGASGAGA GTISCQDCGN QAKKDCAHMR  120
CRTCCKSRGF DCPTHVRSTW VPAAKRRERQ HQLATGAAEP SKRLRDAQPS STTATTTSSG  180
EQQQQMAMAG ERFPREVSSE VVFRCVRLGP VDEADAEVAY QTSVSIAGHV FKGILHDIGP  240
DPSVAAAGGL RHPAEGSSPS TAAAGEGIVA GAVSSSAVVM DPYPTPGPYG GMPFFHGHPR
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo013214.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9687730.0EU968773.1 Zea mays clone 324045 SHI mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004974131.11e-145protein SHI RELATED SEQUENCE 1
TrEMBLA0A1E5VL450.0A0A1E5VL45_9POAL; Protein SHORT INTERNODES
STRINGSi015301m1e-145(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP135435124
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66350.12e-51Lateral root primordium (LRP) protein-related