PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Do013192.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
|
||||||||
Family | bZIP | ||||||||
Protein Properties | Length: 219aa MW: 24823 Da PI: 10.3293 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 48.1 | 2.4e-15 | 82 | 142 | 3 | 63 |
XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 elkr rr+++NR++A+rsRqRK++ ++ L v++L + ++L+ l++ ++++a+ ++++ Do013192.1 82 ELKRKRRMESNRVSAKRSRQRKQQHLDDLNSQVDQLRTTKQQLITALNNTTQNYAAAEAQN 142 79***************************************************99888776 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 1.0E-13 | 80 | 144 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 10.3 | 82 | 145 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF00170 | 2.9E-12 | 82 | 138 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 3.38E-11 | 83 | 136 | No hit | No description |
Gene3D | G3DSA:1.20.5.170 | 1.7E-11 | 84 | 157 | No hit | No description |
CDD | cd14702 | 4.59E-15 | 85 | 136 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 87 | 102 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 219 aa Download sequence Send to blast |
MSQILLDASR SRFMINSTLR RGTHLVLSFS VVFLYWFYVF SKNLLRMTLS GGTFSSGTSS 60 GSSHGTHSFG SEGDMELQAR MELKRKRRME SNRVSAKRSR QRKQQHLDDL NSQVDQLRTT 120 KQQLITALNN TTQNYAAAEA QNSVLRTQMI ELESRLSALR DIIYYMNANQ VSNAATINAN 180 PSTIISTTAN YDPFGTSAWN SGMQQMVQQP IDHLLYQCF |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 96 | 101 | KRSRQR |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Do013192.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | EU956749 | 3e-42 | EU956749.1 Zea mays clone 1572457 light-inducible protein CPRF-2 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_025822603.1 | 1e-103 | bZIP transcription factor 44-like isoform X1 | ||||
TrEMBL | A0A1E5VMU6 | 1e-161 | A0A1E5VMU6_9POAL; Uncharacterized protein | ||||
STRING | Sb07g015450.1 | 5e-95 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3740 | 32 | 76 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G34590.1 | 2e-23 | G-box binding factor 6 |