PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do013120.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family NAC
Protein Properties Length: 419aa    MW: 44055.3 Da    PI: 8.6936
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do013120.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM172.21.5e-53311591128
         NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk..kg 97 
                 lppGfrFhPtdeelvv+yLkkk+++ +l++  +i+e+d+yk++Pw+Lp k++ +e+ewyfFs+rd+ky++g r+nra++sgyWkatg+dk++l++  ++
  Do013120.1  31 LPPGFRFHPTDEELVVHYLKKKAASAPLPV-AIIAEIDLYKFDPWELPDKASFGEQEWYFFSPRDRKYPNGARPNRAATSGYWKATGTDKPILASggNR 128
                 79****************************.88***************888899****************************************98888 PP

         NAM  98 elvglkktLvfykgrapkgektdWvmheyrl 128
                 e+vg+kk Lvfy+g+ pkg kt+W+mheyrl
  Do013120.1 129 EKVGVKKALVFYRGKPPKGLKTNWIMHEYRL 159
                 88***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019416.28E-6328201IPR003441NAC domain
PROSITE profilePS5100561.65531201IPR003441NAC domain
PfamPF023655.9E-2832159IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009753Biological Processresponse to jasmonic acid
GO:0045995Biological Processregulation of embryonic development
GO:0048317Biological Processseed morphogenesis
GO:0080060Biological Processintegument development
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 419 aa     Download sequence    Send to blast
MRSMESTDSS SGSAPPQQRQ QQKQPGSAPD LPPGFRFHPT DEELVVHYLK KKAASAPLPV  60
AIIAEIDLYK FDPWELPDKA SFGEQEWYFF SPRDRKYPNG ARPNRAATSG YWKATGTDKP  120
ILASGGNREK VGVKKALVFY RGKPPKGLKT NWIMHEYRLA DAASSTTNRP PPPPPPPATA  180
GGGKATSLRL DDWVLCRIYK KANKLGVGDQ QRSVECEDSD EDAVVAAYPR HAAAAMAAAA  240
GGGAAHGGNY TSLLGHQDSF LDGLLTVTAE DAGGLSAGAS SLSHLAAAAR AAPAATKQLL  300
VPSSTPFNWL DASALAILPP TKRSYHGYSR DTTTTDGGMS LSSPSERNNL GPVGAGAIEN  360
GTSGGGGGAT AIPTFLNPLG VQAAATYHHH AILGTPVSPE AAACTFQHPY QLPGVNWNP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A8e-73212017165NO APICAL MERISTEM PROTEIN
1ut4_B8e-73212017165NO APICAL MERISTEM PROTEIN
1ut7_A8e-73212017165NO APICAL MERISTEM PROTEIN
1ut7_B8e-73212017165NO APICAL MERISTEM PROTEIN
3swm_A8e-732120110168NAC domain-containing protein 19
3swm_B8e-732120110168NAC domain-containing protein 19
3swm_C8e-732120110168NAC domain-containing protein 19
3swm_D8e-732120110168NAC domain-containing protein 19
3swp_A8e-732120110168NAC domain-containing protein 19
3swp_B8e-732120110168NAC domain-containing protein 19
3swp_C8e-732120110168NAC domain-containing protein 19
3swp_D8e-732120110168NAC domain-containing protein 19
4dul_A8e-73212017165NAC domain-containing protein 19
4dul_B8e-73212017165NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor of the NAC family associated with the grain protein content (GPC). Accelerates senescence and increases nutrient remobilization from leaves to developing grains. Sequences of 11 European varieties of H.vulgare tested belongs to the same haplotype while the sequence found in H.spontaneum, an ancestor of the cultivated H.vulgare which has a higher GPC, belongs to an other haplotype. {ECO:0000269|PubMed:17124321}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00361DAPTransfer from AT3G15510Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo013120.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0859890.0BT085989.1 Zea mays full-length cDNA clone ZM_BFc0095M07 mRNA, complete cds.
GenBankBT0864670.0BT086467.1 Zea mays full-length cDNA clone ZM_BFc0169O24 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025802635.10.0NAC transcription factor NAM-B2-like
SwissprotA0SPJ91e-180NAM2_HORVV; NAC transcription factor NAM-2
TrEMBLA0A1E5VLH70.0A0A1E5VLH7_9POAL; NAC transcription factor NAM-2
STRINGPavir.J08552.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP75723649
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15510.11e-89NAC domain containing protein 2
Publications ? help Back to Top
  1. Uauy C,Distelfeld A,Fahima T,Blechl A,Dubcovsky J
    A NAC Gene regulating senescence improves grain protein, zinc, and iron content in wheat.
    Science, 2006. 314(5803): p. 1298-301
    [PMID:17124321]