PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Do013078.1

Organism

Dichanthelium oligosanthes

Taxonomic ID

888268

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium

Family

Dof

Protein Properties

Length: 377aa MW: 38723 Da PI: 9.6672

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Do013078.1	genome	Dichan	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	125.6	1.6e-39	84	144	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 +e alkcprCdstntkfCyynnyslsqPr+fCkaCrryWt+GG+lrnvPvGgg+r+nk+ss Do013078.1 84 PEPALKCPRCDSTNTKFCYYNNYSLSQPRHFCKACRRYWTRGGSLRNVPVGGGCRRNKRSS 144 67899*****************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	8.0E-33	74	140	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	3.9E-33	87	142	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.795	88	142	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	90	126	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 377 aa Download sequence Send to blast
MVFPSVPPYL DPPNWNNQEQ GQQPRASGGG DAPLLPVGPA AATAAAPDAS GLPSSSSGAS 60 AAMAAQARPN SMAERARLAR MPQPEPALKC PRCDSTNTKF CYYNNYSLSQ PRHFCKACRR 120 YWTRGGSLRN VPVGGGCRRN KRSSKSSSSA AGSSFSSKPS SSARQLGGPS STPSTTPGAT 180 GTIIPPGLGS FSHHLPFLGS MHQPGPNLGL AFSTGLPPLG MQHMDTVDQF PVASGGGATI 240 GASLEQWRVQ QQPQQQFPFL TGGGILEFPP PPMYQLGLDA NRGGSGSAAA DAFTLGQTSA 300 TTARQEGSMK VEDSKGQDMS LQRQYMAALR HGSQGVWEGN AGSSGGGGDG NGGSSWPMNI 360 PGFHSSSTGG GNGSGLL

Sequence ? help Back to Top

Protein Sequence Length: 377 aa Download sequence Send to blast

MVFPSVPPYL DPPNWNNQEQ GQQPRASGGG DAPLLPVGPA AATAAAPDAS GLPSSSSGAS  60
AAMAAQARPN SMAERARLAR MPQPEPALKC PRCDSTNTKF CYYNNYSLSQ PRHFCKACRR  120
YWTRGGSLRN VPVGGGCRRN KRSSKSSSSA AGSSFSSKPS SSARQLGGPS STPSTTPGAT  180
GTIIPPGLGS FSHHLPFLGS MHQPGPNLGL AFSTGLPPLG MQHMDTVDQF PVASGGGATI  240
GASLEQWRVQ QQPQQQFPFL TGGGILEFPP PPMYQLGLDA NRGGSGSAAA DAFTLGQTSA  300
TTARQEGSMK VEDSKGQDMS LQRQYMAALR HGSQGVWEGN AGSSGGGGDG NGGSSWPMNI  360
PGFHSSSTGG GNGSGLL

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Do013078.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KC582400	0.0	KC582400.1 Sorghum bicolor dof3 protein (dof3) gene, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025791451.1	0.0	dof zinc finger protein DOF5.1-like isoform X2
TrEMBL	A0A1E5VP38	0.0	A0A1E5VP38_9POAL; Dof zinc finger protein DOF5.1
STRING	Pavir.J14669.1.p	1e-180	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP12301	24	32

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G02460.1	4e-38	Dof family protein