PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do013052.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family MYB
Protein Properties Length: 604aa    MW: 66051.2 Da    PI: 9.2528
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do013052.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding29.91.3e-096594130
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIart 30
                     +g WT+eEde l +av+ + g++Wk+I +t
       Do013052.1 65 KGGWTPEEDETLRKAVETFKGRNWKKIGNT 94
                     688************************876 PP
2Myb_DNA-binding38.13.5e-12134171644
                      HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHH CS
  Myb_DNA-binding   6 teEdellvdavkqlGggtWktIartmgkgRtlkqcksrw 44 
                      ++Ed++++d+v+++G+  W+ Ia+ ++ gR +kqc++r+
       Do013052.1 134 QQEDDKIIDLVRKYGPTKWSIIAKSLP-GRIGKQCRERY 171
                      58*************************.**********9 PP
3Myb_DNA-binding57.62.9e-18202245146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      +++WT+eE+  l++a++ +G++ W+ Ia+ ++ gRt++++k++w++
       Do013052.1 202 KDAWTPEEERALINAHRVYGNK-WAEIAKALP-GRTDNSIKNHWNS 245
                      679*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.35360107IPR017877Myb-like domain
SuperFamilySSF466894.16E-66294IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.605.4E-862108IPR009057Homeodomain-like
SMARTSM007171364126IPR001005SANT/Myb domain
PfamPF002496.9E-76592IPR001005SANT/Myb domain
CDDcd001672.77E-56891No hitNo description
PROSITE profilePS5129414.855125182IPR017930Myb domain
CDDcd001671.42E-10134171No hitNo description
PfamPF002495.2E-11134171IPR001005SANT/Myb domain
SuperFamilySSF466892.47E-10134172IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.3E-15134197IPR009057Homeodomain-like
SMARTSM007170.012134180IPR001005SANT/Myb domain
SuperFamilySSF466891.86E-21191254IPR009057Homeodomain-like
PROSITE profilePS5129428.716197251IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.9E-24198251IPR009057Homeodomain-like
SMARTSM007177.2E-18201249IPR001005SANT/Myb domain
PfamPF002491.6E-16202245IPR001005SANT/Myb domain
CDDcd001672.27E-14204247No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 604 aa     Download sequence    Send to blast
MGAMAEVVQE GCVENRQPLA ASSSSVSDGS SCGGGGRTGT SPPVSSSGNS ISGLRRTSGP  60
IRRAKGGWTP EEDETLRKAV ETFKGRNWKK IGNTAVAFDM KINCECEQFL WRPENIWSEY  120
GTTKRKMLYL CHFQQEDDKI IDLVRKYGPT KWSIIAKSLP GRIGKQCRER YSSDHVHIIR  180
KVIFLNYWNC RWHNHLNPEI RKDAWTPEEE RALINAHRVY GNKWAEIAKA LPGRTDNSIK  240
NHWNSSLRKK LDVYGANSVL QASNLLAHDD FKDQMRPVAT GNHLDLNKMP SIGSRDVPGR  300
PHHSIMGPLS QAYNLKHVKD SRFLSLSIPT AQTSYGMSSL VDGSAVTLAV QGLGSDSVRD  360
KGLEIDSIHE KGIEVSSTPD PVGEGCAIQL ESAPAKSGTK SSLKTELYST LGPLCYLIPN  420
MEEVAPISSS LHSEHHGAHQ TTQHSRDVLM SPDGYTSPSP TIGKVSSPLT VDSILKTAAD  480
SFPCTPSILR KRKRDKSTPT SDNESKMGGL NTDSFYTPNG KGATTNTSRS FKTASFMSLG  540
PLDGLTSVRS SDASPPYQIR SKRMAAMKSV EKQLDFSGDG LDTSGSEILN SPCHNSRGAN  600
SNRT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C1e-44642515159MYB PROTO-ONCOGENE PROTEIN
1h89_C1e-44642515159MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1489495RKRKRDK
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in abiotic stress responses (PubMed:17293435, PubMed:19279197). May play a regulatory role in tolerance to salt, cold, and drought stresses (PubMed:17293435). Transcriptional activator that binds specifically to a mitosis-specific activator cis-element 5'-(T/C)C(T/C)AACGG(T/C)(T/C)A-3', found in promoters of cyclin genes such as CYCB1-1 and KNOLLE (AC Q84R43). Positively regulates a subset of G2/M phase-specific genes, including CYCB1-1, CYCB2-1, CYCB2-2, and CDC20.1 in response to cold treatment (PubMed:19279197). {ECO:0000269|PubMed:17293435, ECO:0000269|PubMed:19279197}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo013052.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by cold, drought and salt stresses. {ECO:0000269|PubMed:17293435}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004970536.10.0transcription factor MYB3R-2
SwissprotQ0JHU70.0MB3R2_ORYSJ; Transcription factor MYB3R-2
TrEMBLA0A1E5VLR50.0A0A1E5VLR5_9POAL; Myb-related protein 3R-1
STRINGSi000842m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30993880
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G02320.22e-73myb domain protein 3r-5
Publications ? help Back to Top
  1. Kakar KU, et al.
    A consortium of rhizobacterial strains and biochemical growth elicitors improve cold and drought stress tolerance in rice (Oryza sativa L.).
    Plant Biol (Stuttg), 2016. 18(3): p. 471-83
    [PMID:26681628]