PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do013016.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family GRAS
Protein Properties Length: 451aa    MW: 48998.6 Da    PI: 6.6459
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do013016.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS398.66.7e-122494461374
        GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykal.ppsetseknsseelaalklfsevsPilkfshlta 98 
                 l++lLl+cA a ++g l +a+a+L+++ +la+pdgd+mqR+aa f+eALa+r +r +++l++al  p++++    +e +aa++ f +++P+l+++  +a
  Do013016.1  49 LIHLLLNCAAAAAAGRLDAANAALEHIATLAAPDGDAMQRVAAAFAEALARRALRAWPGLCRALlLPRAAP--AAAELAAARRHFLDLCPFLRLAGAAA 145
                 689************************************************************95455544..68999999999*************** PP

        GRAS  99 NqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvk 197
                 Nq Ilea+e+e+ v +iD++    +QW+ Ll+ La+Rpegpp+lR+T+v++    +k+ l +t+  L+k Ae+l+vpf+fn+ v++rl++l++e+Lrvk
  Do013016.1 146 NQSILEAMESEKIVXVIDLGGADATQWLELLHLLAARPEGPPHLRLTAVHE----HKDVLTQTAMVLTKEAERLDVPFQFNP-VVSRLDALDVESLRVK 239
                 ***************************************************....9**************************.7*************** PP

        GRAS 198 pgEalaVnlvlqlhrll..............................desvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysa 266
                 +gEala+ ++lqlh ll                              +   +++s+ d++L ++++lsPkv+vv+eqea+hn++ + erf+eal+yy+a
  Do013016.1 240 TGEALAITSSLQLHCLLasdddsganagvgvggkdnnnsnkerrspeSGLSPSTSRADAFLGALWGLSPKVMVVTEQEASHNAPALTERFVEALNYYAA 338
                 ******************************************9997522233344789***************************************** PP

        GRAS 267 lfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdr 365
                 lfd+le+ ++r s er+ vEr llg+ei+n+vac g errerhe+le+W +r+e aGF+ vpls++a  qa++  +  + dg++v ee+gs++l+W+dr
  Do013016.1 339 LFDCLEVVASRGSVERARVERWLLGEEIKNIVACDGVERRERHERLERWARRVEGAGFGRVPLSYYALLQARRAAQGLGCDGFKVREEKGSFFLCWQDR 437
                 *************************************************************************************************** PP

        GRAS 366 pLvsvSaWr 374
                 p++svSaWr
  Do013016.1 438 PIFSVSAWR 446
                 ********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098555.54723426IPR005202Transcription factor GRAS
PfamPF035142.3E-11949446IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009739Biological Processresponse to gibberellin
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 451 aa     Download sequence    Send to blast
MVQDEGSSSS VTSSPLHNFS NMPLHPAAAA PTPPWMLREL RSDERGLCLI HLLLNCAAAA  60
AAGRLDAANA ALEHIATLAA PDGDAMQRVA AAFAEALARR ALRAWPGLCR ALLLPRAAPA  120
AAELAAARRH FLDLCPFLRL AGAAANQSIL EAMESEKIVX VIDLGGADAT QWLELLHLLA  180
ARPEGPPHLR LTAVHEHKDV LTQTAMVLTK EAERLDVPFQ FNPVVSRLDA LDVESLRVKT  240
GEALAITSSL QLHCLLASDD DSGANAGVGV GGKDNNNSNK ERRSPESGLS PSTSRADAFL  300
GALWGLSPKV MVVTEQEASH NAPALTERFV EALNYYAALF DCLEVVASRG SVERARVERW  360
LLGEEIKNIV ACDGVERRER HERLERWARR VEGAGFGRVP LSYYALLQAR RAAQGLGCDG  420
FKVREEKGSF FLCWQDRPIF SVSAWRGRRF D
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A1e-59334482380Protein SCARECROW
5b3h_D1e-59334482380Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo013016.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0975350.0FP097535.1 Phyllostachys edulis cDNA clone: bphylf044j19, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002456925.10.0scarecrow-like protein 3
SwissprotQ9LPR81e-172SCL3_ARATH; Scarecrow-like protein 3
TrEMBLA0A1E5VM940.0A0A1E5VM94_9POAL; Scarecrow-like protein 3
STRINGSb03g045660.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP60438176
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.11e-114scarecrow-like 3
Publications ? help Back to Top
  1. Gong X, et al.
    SEUSS Integrates Gibberellin Signaling with Transcriptional Inputs from the SHR-SCR-SCL3 Module to Regulate Middle Cortex Formation in the Arabidopsis Root.
    Plant Physiol., 2016. 170(3): p. 1675-83
    [PMID:26818732]
  2. Lee SA, et al.
    Interplay between ABA and GA Modulates the Timing of Asymmetric Cell Divisions in the Arabidopsis Root Ground Tissue.
    Mol Plant, 2016. 9(6): p. 870-84
    [PMID:26970019]
  3. Choi JW,Lim J
    Control of Asymmetric Cell Divisions during Root Ground Tissue Maturation.
    Mol. Cells, 2016. 39(7): p. 524-9
    [PMID:27306644]