PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Do012987.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
|
||||||||
Family | M-type_MADS | ||||||||
Protein Properties | Length: 152aa MW: 16325.6 Da PI: 9.8481 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 54 | 2.2e-17 | 28 | 66 | 2 | 40 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviif 40 i+n++nrqv fsk rngilKKA E+SvLCdae v Do012987.1 28 WIKNSINRQVIFSKCRNGILKKAREISVLCDAEFGVTAS 66 69******************************9877655 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 7.1E-20 | 19 | 78 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 20.451 | 19 | 69 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 2.75E-18 | 20 | 87 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.7E-16 | 21 | 41 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 7.3E-14 | 29 | 68 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.7E-16 | 41 | 56 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.7E-16 | 56 | 77 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 152 aa Download sequence Send to blast |
LLGATADGAS PLSLTAPQPR RGKIEIKWIK NSINRQVIFS KCRNGILKKA REISVLCDAE 60 FGVTASSSSP APASSTTSAP QKDILTELSR AELEPIRALV EPSSSLTMSS NMNSGSLEPS 120 LHVFARARLV DSLTCNQTPS FLNQTHQIYA TK |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Do012987.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AJ292959 | 2e-54 | AJ292959.1 Zea mays mRNA for putative MADS-domain transcription factor (m16 gene). | |||
GenBank | BT064849 | 2e-54 | BT064849.1 Zea mays full-length cDNA clone ZM_BFb0210M20 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A1E5UJY1 | 1e-106 | A0A1E5UJY1_9POAL; Uncharacterized protein (Fragment) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G57230.2 | 3e-15 | AGAMOUS-like 16 |