PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Do012986.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
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Family | bHLH | ||||||||
Protein Properties | Length: 261aa MW: 27600.5 Da PI: 6.1581 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 17.7 | 6.7e-06 | 116 | 155 | 10 | 54 |
HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 + RR+ri +++ L+el+P+ K + a++L + +Y+k L Do012986.1 116 KLRRERIAERMRALQELVPNT-----NKTDRAAMLDEILDYVKFL 155 88******************7.....5***************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 13.217 | 106 | 155 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 4.4E-6 | 112 | 161 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 3.46E-7 | 114 | 160 | No hit | No description |
SuperFamily | SSF47459 | 2.49E-11 | 115 | 165 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.8E-10 | 116 | 166 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 261 aa Download sequence Send to blast |
MAGQPPPPPP PGGAEDDFLE HFFAFPSAAS AGAAGGHAGA GAGGDHPFPL ALSLDAAAAK 60 QDRDTVQLAG LFPPVFGGGG VQQPHLRGPP PPQMFHPQPK PGEGAMAPQP PAPRPKLRRE 120 RIAERMRALQ ELVPNTNKTD RAAMLDEILD YVKFLRLQVK VLSMSRLGGA GAVAQLVADI 180 PLSVKGEASD SGSPQHIWEK WSTDGTEKQV AKMMEEDIGA AMQFLQSKAL CMMPISLAMA 240 IYDTQQPQDG HSLKPEPNTS S |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Required for ovule fertilization. {ECO:0000269|PubMed:15634699}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Do012986.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FP096075 | 1e-161 | FP096075.1 Phyllostachys edulis cDNA clone: bphyem116n19, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025804227.1 | 1e-152 | transcription factor UNE12 | ||||
Swissprot | O22768 | 2e-63 | UNE12_ARATH; Transcription factor UNE12 | ||||
TrEMBL | A0A1E5UJT9 | 0.0 | A0A1E5UJT9_9POAL; Transcription factor UNE12 | ||||
STRING | Pavir.Ba03672.1.p | 1e-152 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2656 | 35 | 80 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G02590.3 | 1e-55 | bHLH family protein |
Publications ? help Back to Top | |||
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