PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do012980.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family CPP
Protein Properties Length: 706aa    MW: 75653.3 Da    PI: 6.3821
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do012980.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR25.72.4e-08425459741
         TCR   7 nCkkskClkkYCeCfaagkkCseeCkCedCkNkee 41 
                 +C+ s+ +  YC Cfaa+++Cs +C+C++C N+++
  Do012980.1 425 SCQESHKKXSYCACFAAKVYCSGSCSCQGCLNNHT 459
                 59******************************987 PP
2TCR33.58.2e-11505526122
         TCR   1 kekkgCnCkkskClkkYCeCfa 22 
                 ++k+gCnC+ks+ClkkYCeCf+
  Do012980.1 505 RHKRGCNCRKSSCLKKYCECFQ 526
                 589******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011140.0032419460IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163421.962422547IPR005172CRC domain
PfamPF036386.0E-5425457IPR005172CRC domain
SMARTSM011144.5E-4505534IPR033467Tesmin/TSO1-like CXC domain
PfamPF036381.4E-6507526IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 706 aa     Download sequence    Send to blast
MGPPESPPAG RPSSAAVSLY EVGLGSTPHP PQQPPTPPAA PRFAAFLSSG KDLSILLFMW  60
PRDGYVQLSQ GLSPNCQRNQ IEISSCIELS GSPTIASENY SPSEDATILP SKWPQSIPLG  120
SETLGGAKKQ DTDGKADHSA DVGQVKLSIT CYNQNGIDQM DSSTSGRNVQ ENELAKQYND  180
DLAACSLNHL ISHSGTGSGV MSKSDMSIEA QQLSWKLRSD DVISSKSFMP MDQGNLEASR  240
RKLFEGSTGC YIQSAANDAH VYCAGAAEDV AMNHDPEVLP GGIQSQLVSN EYFFDTFKVP  300
SDDMALSEHQ CGSMHRRSLF NEKVGTSDMS VQSGLNLHRA NICGDNYLKP ALSLVCALPG  360
IGLHLNAVAP NSSNNVPFGI NPPLPPEHNS XTTIVSCSET GLYNSEVYTH DDHSSQKIMP  420
NADESCQESH KKXSYCACFA AKVYCSGSCS CQGCLNNHTH EETVSCIRKR TESRNPLAFA  480
PTVTRACGSG SDFGDDSNKT PASARHKRGC NCRKSSCLKK YCECFQVLMF LFSLKGVLLL  540
ATEKMEKEAK TKNTRSKEEK LAFDKQHSVG QSGDLPFTEN LFATPSLEPC RSSILLPSTC  600
SEPPLSTAGC SSQPHNSQSP MKADVLLSSF ETCAAEMILG DGSSNIQEVS SSCITSVKVV  660
SPNKKRVSPL HIGAGLSPIG RSGRKLVLKS IPSFPSLTGD ADSETH
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo012980.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025797027.10.0protein tesmin/TSO1-like CXC 2 isoform X1
TrEMBLA0A368SHB60.0A0A368SHB6_SETIT; Uncharacterized protein
STRINGSi034711m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP147741921
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22780.12e-45Tesmin/TSO1-like CXC domain-containing protein