PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Do012864.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
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Family | LBD | ||||||||
Protein Properties | Length: 189aa MW: 20543.8 Da PI: 6.5001 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 41.4 | 4e-13 | 38 | 69 | 1 | 32 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfan 32 +CaaCk+lrr+Ca+dCvlapyfpa+qp+++a+ Do012864.1 38 RCAACKYLRRRCAPDCVLAPYFPASQPRRYAY 69 6***************************9986 PP | |||||||
2 | DUF260 | 42.6 | 1.8e-13 | 70 | 123 | 48 | 101 |
DUF260 48 alpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkeel 101 +lp +er +a+++++ eA++r++dPvyG++gvi +lqq+++ +++ela+++++l Do012864.1 70 SLPVQERGRAADTMATEARWRMQDPVYGCTGVIYRLQQEIRAVQHELARTRAQL 123 578899*******************************************99875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 11.799 | 37 | 123 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 5.6E-11 | 38 | 68 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 2.3E-11 | 71 | 120 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 189 aa Download sequence Send to blast |
MSSSSSSAGA GSMEVDHQQL LDYGGGGCGG GNNNNPRRCA ACKYLRRRCA PDCVLAPYFP 60 ASQPRRYAYS LPVQERGRAA DTMATEARWR MQDPVYGCTG VIYRLQQEIR AVQHELARTR 120 AQLAVHVQGT ALLQRTQQPT PLLPPPXPLA PAAAVAVHAG AHGVTVHEEE DEEAPLMDPD 180 EFLDLDGRF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 6e-20 | 39 | 123 | 12 | 111 | LOB family transfactor Ramosa2.1 |
5ly0_B | 6e-20 | 39 | 123 | 12 | 111 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Do012864.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022683529.1 | 2e-61 | LOB domain-containing protein 24 | ||||
TrEMBL | A0A1E5VMB8 | 1e-136 | A0A1E5VMB8_9POAL; LOB domain-containing protein 24 | ||||
STRING | Si015521m | 2e-67 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5282 | 35 | 62 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G26660.1 | 5e-30 | LOB domain-containing protein 24 |