PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do012782.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family MYB
Protein Properties Length: 297aa    MW: 32559.8 Da    PI: 8.9053
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do012782.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding37.74.6e-121863146
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
                     +g+W +eEde l++ v+++G++ W++I ++  + Rt+k+c++rw +
       Do012782.1 18 KGPWAAEEDEVLLRHVQEHGPREWSSIRSKGLLPRTGKSCRLRWVN 63
                     79*************************8876677**********87 PP
2Myb_DNA-binding43.38.4e-1474114345
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                      ++++eE+   +d+ +q+G++ W++Ia +++ gRt++++k++w 
       Do012782.1  74 KFSAEEERVVLDLQAQFGNK-WARIATYLP-GRTDNDVKNFWS 114
                      79******************.*********.***********5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129420.2141369IPR017930Myb domain
Gene3DG3DSA:1.10.10.606.9E-201366IPR009057Homeodomain-like
SuperFamilySSF466892.43E-2716113IPR009057Homeodomain-like
SMARTSM007172.3E-101767IPR001005SANT/Myb domain
CDDcd001672.75E-112065No hitNo description
PfamPF139214.5E-112171No hitNo description
Gene3DG3DSA:1.10.10.604.2E-1867119IPR009057Homeodomain-like
PROSITE profilePS5129417.57870121IPR017930Myb domain
SMARTSM007171.0E-1171119IPR001005SANT/Myb domain
PfamPF002491.2E-1174114IPR001005SANT/Myb domain
CDDcd001671.55E-1074113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048235Biological Processpollen sperm cell differentiation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    Send to blast
MMKPRGGRGG GEQPAVRKGP WAAEEDEVLL RHVQEHGPRE WSSIRSKGLL PRTGKSCRLR  60
WVNKLRPDLK TGCKFSAEEE RVVLDLQAQF GNKWARIATY LPGRTDNDVK NFWSTRQKRL  120
ARLLRSPLPR RRPGKQSCGV SSSHAHELPT QKETTTTQNN GESSSRQDPR TVNQRADAAF  180
PGAHGLPPPP IPLLMHVGPE RGSSSATPPP TALLLPFGGD TGHPVAAVDP AASPEPLTVV  240
PPGPFFGLDD DDHVHQDMSG VRFDDLPAEM LDFFELPHLP ASPFPFPPLP PSPSDLL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C1e-271411923126MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000305}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo012782.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025822469.11e-117probable transcription factor MYB58
SwissprotQ0JB893e-71MYB58_ORYSJ; Probable transcription factor MYB58
TrEMBLA0A1E5VYD20.0A0A1E5VYD2_9POAL; Transcription factor GAMYB
STRINGSi015815m1e-141(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP57003357
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60460.14e-60MYB family protein
Publications ? help Back to Top
  1. Yilmaz A, et al.
    GRASSIUS: a platform for comparative regulatory genomics across the grasses.
    Plant Physiol., 2009. 149(1): p. 171-80
    [PMID:18987217]