PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do012744.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family MYB
Protein Properties Length: 402aa    MW: 43085 Da    PI: 6.6996
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do012744.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding47.73.7e-152370148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g W++eEde+lv +  + G g+W+ +ar  g+ R++k+c++rw +yl
       Do012744.1 23 KGLWSPEEDEKLVAYMLRSGQGSWSDVARNAGLQRCGKSCRLRWINYL 70
                     678*******************************************97 PP
2Myb_DNA-binding52.21.4e-1676119146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg+++++E+el+v +++ lG++ W+ Ia++++ gRt++++k++w++
       Do012744.1  76 RGAFSPQEEELIVSLHAILGNR-WSQIAARLP-GRTDNEIKNFWNS 119
                      89********************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.0271870IPR017930Myb domain
SuperFamilySSF466892.03E-2821117IPR009057Homeodomain-like
SMARTSM007178.7E-112272IPR001005SANT/Myb domain
PfamPF002492.8E-132370IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.8E-222477IPR009057Homeodomain-like
CDDcd001673.51E-92670No hitNo description
PROSITE profilePS5129425.33971125IPR017930Myb domain
SMARTSM007179.6E-1675123IPR001005SANT/Myb domain
PfamPF002495.8E-1576119IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.3E-2578126IPR009057Homeodomain-like
CDDcd001672.41E-1178118No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009751Biological Processresponse to salicylic acid
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0050832Biological Processdefense response to fungus
GO:1901348Biological Processpositive regulation of secondary cell wall biogenesis
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 402 aa     Download sequence    Send to blast
MRKPEGPAAS SCNAGAAAAK LRKGLWSPEE DEKLVAYMLR SGQGSWSDVA RNAGLQRCGK  60
SCRLRWINYL RPDLKRGAFS PQEEELIVSL HAILGNRWSQ IAARLPGRTD NEIKNFWNST  120
IKKRLKNSSS ASSPAATDCA SPEPNNKVTG IDGASSCPDL AVLDHQDGGH HAMMTTGLWM  180
VDSSSYTSSS TSPMQSRPPS TMAAAVARSY GGLLPLPDQL RGGMAADTSP AGLFHGHTAP  240
FKHQVASLHG GYYGSTPHHH GMMAIEAGGG CFMRGEGLFG VPPLLEAMSA QDQDQAGQTL  300
MASSGGNNPK NNSSNNTTET ATTTTTTTVS NNESNITDNT TTKDNINTMS LVMNSSSSNV  360
AAVYWEGAHQ QYMSRNVMHG EWDLEELMKD VSSLPFLDFQ VE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-28211255108B-MYB
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00599PBMTransfer from AT5G12870Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo012744.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT0750940.0KT075094.1 Panicum virgatum secondary wall-associated MYB domain-containing protein (MYB46A) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025808414.10.0myb-related protein 330-like
TrEMBLA0A1E5W8980.0A0A1E5W898_9POAL; Transcription factor MYB46
STRINGPavir.Ca02370.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP98213545
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12870.13e-66myb domain protein 46