PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do012729.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family CPP
Protein Properties Length: 470aa    MW: 51938.5 Da    PI: 7.4442
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do012729.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR42.11.7e-1371110141
         TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkee 41 
                 k+kk+CnCk+s+Clk+YCeCfaa  +C+  C+C++C N+ e
  Do012729.1  71 KKKKHCNCKNSQCLKLYCECFAASDYCDG-CNCKQCGNTVE 110
                 589**************************.********987 PP
2TCR50.44.3e-16155194140
         TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                 k++kgC+Ckks ClkkYCeCf+a+  Cs++CkC dCkN e
  Do012729.1 155 KHNKGCHCKKSGCLKKYCECFQANILCSKNCKCMDCKNFE 194
                 589***********************************65 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011148.9E-1471111IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163435.01472195IPR005172CRC domain
PfamPF036382.0E-1073108IPR005172CRC domain
SMARTSM011146.0E-19155196IPR033467Tesmin/TSO1-like CXC domain
PfamPF036381.3E-12158193IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 470 aa     Download sequence    Send to blast
MEQEKQQLVE PPAPATAPQA ASEPRAPPQQ EQQPKPAVPV QPSMPVTRPW PMAINPSMKP  60
VVEMKSGNPA KKKKHCNCKN SQCLKLYCEC FAASDYCDGC NCKQCGNTVE NEKGRQEAIN  120
NTKLRNPNAF QPKIENGPIT PSVRKDSGAT PSHPKHNKGC HCKKSGCLKK YCECFQANIL  180
CSKNCKCMDC KNFEGSEELR TIIQGDNSCD RNNIQQAANV ALNGAIGSSG YRFSPIRRKR  240
PPEDPHYQRL NVEGSMMQTQ FQEANHVDAS QIASSTGLEA STGNFQGKSK MVYRSPLANT  300
IHLTDVNDLA NHLVIVCRKA AEGFTTIADN KVEMEIDREI CTNTDQNFDE NKKEVQEAAA  360
SQLGNVTNID EQIPGDSGSY CSYTQEDSRP ASPGTRALLC DEQDLTFGTA YRSSIPVALH  420
DQDISELHTV QENAVLREFR NCLRLIIARG KVNGEMVSKI LYLSQKENPL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A1e-27662044132Protein lin-54 homolog
5fd3_B1e-27662044132Protein lin-54 homolog
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo012729.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0617080.0BT061708.1 Zea mays full-length cDNA clone ZM_BFb0176J22 mRNA, complete cds.
GenBankKJ7280220.0KJ728022.1 Zea mays clone pUT6158 CPP transcription factor (CPP12) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025810512.10.0protein tesmin/TSO1-like CXC 5 isoform X1
TrEMBLA0A1E5W0H90.0A0A1E5W0H9_9POAL; Protein tesmin/TSO1-like CXC 5
STRINGPavir.Da01744.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP57552653
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29000.14e-87Tesmin/TSO1-like CXC domain-containing protein