PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Do012695.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
|
||||||||
Family | GRAS | ||||||||
Protein Properties | Length: 115aa MW: 13900.1 Da PI: 9.9311 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 110.4 | 2.4e-34 | 2 | 114 | 262 | 374 |
GRAS 262 eyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvl 360 ++s+lfd+le+++ r +e+r +Ere++gre+ nv+aceg+er+er et+++W++r +aGF+p+pl+e+++k+a++ ++k + + + v++++ ++++ Do012695.1 2 FFFSSLFDMLEVNATRVDEQRLLIEREFFGREALNVIACEGTERIERPETYKQWQMRNLRAGFRPLPLQEEIMKKARYKVSKSYHRDFLVDKDNRWMLQ 100 689*********************************************************************************999************ PP GRAS 361 gWkdrpLvsvSaWr 374 gWk+r ++++SaW+ Do012695.1 101 GWKGRVIFALSAWT 114 *************6 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 19.723 | 1 | 94 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 8.5E-32 | 2 | 114 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 115 aa Download sequence Send to blast |
MFFFSSLFDM LEVNATRVDE QRLLIEREFF GREALNVIAC EGTERIERPE TYKQWQMRNL 60 RAGFRPLPLQ EEIMKKARYK VSKSYHRDFL VDKDNRWMLQ GWKGRVIFAL SAWTS |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Do012695.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | KF184908 | 5e-98 | KF184908.1 Saccharum hybrid cultivar R570 clone BAC 006C11 complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_025793343.1 | 2e-70 | scarecrow-like protein 9 | ||||
Refseq | XP_025793344.1 | 2e-70 | scarecrow-like protein 9 | ||||
Refseq | XP_025793345.1 | 2e-70 | scarecrow-like protein 9 | ||||
Refseq | XP_025793346.1 | 2e-70 | scarecrow-like protein 9 | ||||
Swissprot | O80933 | 1e-44 | SCL9_ARATH; Scarecrow-like protein 9 | ||||
TrEMBL | A0A1E5VZK4 | 6e-80 | A0A1E5VZK4_9POAL; Scarecrow-like protein 9 | ||||
STRING | Pavir.Ia00281.1.p | 3e-67 | (Panicum virgatum) | ||||
STRING | Si034627m | 3e-67 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP50526 | 2 | 2 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G37650.1 | 5e-47 | GRAS family protein |