PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do012670.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family ERF
Protein Properties Length: 578aa    MW: 62873.8 Da    PI: 10.0459
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do012670.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box23.89.2e-081960338
    zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Ht 38
                +r C+ + + +++++C  ++ +lC+ C  + H+       H+
  Do012670.1 19 ARACDSCLRRRARWYCAADDAFLCQGCDASVHSAnplarrHE 60
                578*****************************6566776776 PP
2AP253.27.5e-17482531255
         AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 
                 +y+GVr+++ +g+W+AeIrdp     r   r +lg f+t eeAaka+ +a+ +++g
  Do012670.1 482 KYRGVRQRP-WGKWAAEIRDP-----RhaVRKWLGMFDTVEEAAKAYGRAAIEFRG 531
                 8********.**********9.....558***********************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.681764IPR000315B-box-type zinc finger
SMARTSM003363.3E-111764IPR000315B-box-type zinc finger
PfamPF006431.9E-62061IPR000315B-box-type zinc finger
CDDcd000219.43E-92264No hitNo description
PROSITE profilePS5101715.993389431IPR010402CCT domain
PfamPF062037.2E-18389431IPR010402CCT domain
PfamPF008471.2E-10482531IPR001471AP2/ERF domain
SMARTSM003801.0E-29482545IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.4E-27482539IPR001471AP2/ERF domain
SuperFamilySSF541713.14E-20482540IPR016177DNA-binding domain
PROSITE profilePS5103222.774482539IPR001471AP2/ERF domain
PRINTSPR003673.3E-9483494IPR001471AP2/ERF domain
CDDcd000189.04E-23485539No hitNo description
PRINTSPR003673.3E-9505521IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005622Cellular Componentintracellular
GO:0016020Cellular Componentmembrane
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 578 aa     Download sequence    Send to blast
MMSGGSKAAA GAAVGGKAAR ACDSCLRRRA RWYCAADDAF LCQGCDASVH SANPLARRHE  60
RLRLRPTSPP HPHSALEAST SSASKKRQQV APAWSKRKAR TRRPHVKSVG QLLSRKLVVV  120
PEVTVESSEE QKAEEDEVEE EQLLYRVPTF DRALAELCSP PPIDDSAVSA AAAPCCREDV  180
HGTVEHAKAP VVADSPVQQL PDSFAGFGPT DAELREFAAD MEALLGQGLD DGNELDESFY  240
MESLGLMTPA EDGGRVKMEP GSSVISHREG ALGRSPAELK PEESAELLDI DFNCSSPTVT  300
DHDEDSFEHK ASASSGVAAD AQFLKRSLDL RLNYEAIIES WGSSPWTDGQ RPNVQLDDFW  360
PHAHHHSGGF WMAGGGQALT PRLGMGGGRE ARVSRYREKR RTRLFAKKIR YEVRKLNAEK  420
RPRMKGRFVK RPAAGGATAA APGDGAAAVI ALDGTESAVA AAAAVGGAAA AGQRRRRKKK  480
NKYRGVRQRP WGKWAAEIRD PRHAVRKWLG MFDTVEEAAK AYGRAAIEFR GPRVKLNFPF  540
PEQLTAGSGS RRGTQRRPRP PPPPCAGAPR RRWSTGRR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-17479540264ATERF1
3gcc_A1e-17479540264ATERF1
5wx9_A1e-174825471480Ethylene-responsive transcription factor ERF096
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1399415RRTRLFAKKIRYEVRKL
2473479RRRRKKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo012670.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9567870.0EU956787.1 Zea mays clone 1573947 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025797872.10.0zinc finger protein CONSTANS-LIKE 16-like
TrEMBLA0A1E5VPM10.0A0A1E5VPM1_9POAL; Zinc finger protein CONSTANS-LIKE 16
STRINGSi017124m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP32833058
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25440.15e-68B-box type zinc finger protein with CCT domain